C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: decapping mRNA 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172795 DCP2 9606 + 5:112976702-113020970 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389063 DCP2-001 112976736-113020970 protein_coding
  ENST00000502635 DCP2-008 112985832-113001215 retained_intron
  ENST00000504961 DCP2-004 112976813-112984651 processed_transcript
  ENST00000508359 DCP2-006 113001126-113008307 retained_intron
  ENST00000510046 DCP2-007 112976794-112986010 retained_intron
  ENST00000512751 DCP2-005 112976942-113007989 nonsense_mediated_decay
  ENST00000513585 DCP2-003 112976710-113013849 protein_coding
  ENST00000515408 DCP2-002 112976702-113020123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389063ENST00000502635ENST00000504961ENST00000515408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389063 2.155±0.00 0.426±0.00 N/A 2.759±0.27 2.228±0.35 0.486±0.04 1.195±0.00 0.761±0.18 0.666±0.25 3.038±0.16 N/A 0.952±0.55 3.880±2.99 1.705±0.28
ENST00000502635 N/A N/A 8.153±0.00 N/A N/A N/A N/A N/A N/A N/A 3.078±0.00 N/A N/A N/A
ENST00000504961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.939±0.00 N/A 2.988±0.00
ENST00000515408 N/A N/A 1.830±0.00 1.786±0.00 1.865±0.00 1.645±0.00 0.784±0.00 1.536±0.00 3.210±0.00 3.746±0.00 0.654±0.00 3.934±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UM CIL_0004UM_0001 CGP 5:112976702-113488830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0006402 IDA mRNA catabolic process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016442 IDA RISC complex
GO:0016787 IEA hydrolase activity
GO:0016896 TAS exoribonuclease activity, producing 5'-phosphomonoesters
GO:0030145 IEA manganese ion binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0050072 IDA m7G(5')pppN diphosphatase activity
GO:0071044 IMP histone mRNA catabolic process
GO:0090503 TAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039016 dcp2 DCP2 decapping enzyme homolog (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000089419 dcp2 DCP2 decapping enzyme homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000024472 Dcp2 DCP2 decapping enzyme homolog (S. cerevisiae) protein_coding Mus_musculus

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