C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: decapping mRNA 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515408 DCP2-002 ENSG00000172795 9606 + 5:112976702-113020123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000515408
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000515408 1.830±0.00 1.786±0.00 1.865±0.00 1.645±0.00 0.784±0.00 1.536±0.00 3.210±0.00 3.746±0.00 0.654±0.00 3.934±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UM CIL_0004UM_0001 CGP 5:112976702-113488830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0006402 IDA mRNA catabolic process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016442 IDA RISC complex
GO:0016787 IEA hydrolase activity
GO:0016896 TAS exoribonuclease activity, producing 5'-phosphomonoesters
GO:0030145 IEA manganese ion binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0050072 IDA m7G(5')pppN diphosphatase activity
GO:0071044 IMP histone mRNA catabolic process
GO:0090503 TAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025350 Dcp2-201 protein_coding Mus_musculus 0 1284

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