C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: decapping mRNA 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389063 DCP2-001 ENSG00000172795 9606 + 5:112976736-113020970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000389063
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000389063 2.155±0.00 0.426±0.00 2.759±0.27 2.228±0.35 0.486±0.04 1.195±0.00 0.761±0.18 0.666±0.25 3.038±0.16 0.952±0.55 3.880±2.99 1.705±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UM CIL_0004UM_0001 CGP 5:112976702-113488830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0006402 IDA mRNA catabolic process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016442 IDA RISC complex
GO:0016787 IEA hydrolase activity
GO:0016896 TAS exoribonuclease activity, producing 5'-phosphomonoesters
GO:0030145 IEA manganese ion binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0050072 IDA m7G(5')pppN diphosphatase activity
GO:0071044 IMP histone mRNA catabolic process
GO:0090503 TAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025350 Dcp2-201 protein_coding Mus_musculus 0 1818

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