C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neurobeachin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172915 NBEA 9606 + 13:34942287-35673022 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310336 NBEA-201 34942319-35672735 protein_coding
  ENST00000379922 NBEA-003 35593006-35672735 protein_coding
  ENST00000379939 NBEA-001 34942660-35672736 protein_coding
  ENST00000400445 NBEA-202 34942287-35672735 protein_coding
  ENST00000461581 NBEA-004 35671050-35673022 processed_transcript
  ENST00000497540 NBEA-002 35069952-35070965 processed_transcript
  ENST00000537702 NBEA-203 35476749-35672735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379922ENST00000379939ENST00000400445ENST00000537702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379922 N/A N/A N/A N/A N/A 0.859±0.00 N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A
ENST00000379939 0.254±0.00 0.366±0.00 0.878±0.00 2.330±0.00 0.727±0.00 1.172±0.00 0.793±0.00 0.541±0.00 0.020±0.00 0.594±0.12 N/A 0.397±0.12 0.054±0.03 1.008±0.09
ENST00000400445 0.166±0.00 0.404±0.00 N/A 5.362±0.34 0.191±0.00 0.987±0.00 0.687±0.07 0.246±0.00 1.142±0.00 N/A 0.314±0.00 0.419±0.26 N/A 0.500±0.25
ENST00000537702 0.356±0.00 N/A N/A 6.354±0.00 0.715±0.00 2.239±0.00 N/A 1.720±0.00 N/A 1.003±0.00 0.687±0.00 1.129±0.41 0.195±0.02 1.149±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UG CIL_0008UG_0001 VISTA 13:34898135-35500283
CIL_0004C5 CIL_0004C5_0002 CGP 13:34942287-35673022

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005802 ISS trans-Golgi network
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0008104 IEA protein localization
GO:0012505 ISS endomembrane system
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010158 nbeab neurobeachin b protein_coding Danio_rerio
ENSDARG00000070080 nbeaa neurobeachin a protein_coding Danio_rerio
ENSMUSG00000027799 Nbea neurobeachin protein_coding Mus_musculus

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