C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease H2, subunit C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172922 RNASEH2C 9606 - 11:65714896-65720947 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308418 RNASEH2C-001 65717673-65720947 protein_coding
  ENST00000527610 RNASEH2C-005 65719721-65720801 protein_coding
  ENST00000528220 RNASEH2C-002 65719170-65720818 protein_coding
  ENST00000530192 RNASEH2C-004 65720054-65720798 retained_intron
  ENST00000531596 RNASEH2C-006 65718767-65720739 nonsense_mediated_decay
  ENST00000533698 RNASEH2C-007 65718536-65720468 nonsense_mediated_decay
  ENST00000534482 RNASEH2C-008 65714896-65720483 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308418ENST00000528220ENST00000530192ENST00000531596ENST00000533698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308418 N/A 10.773±0.00 1.431±0.00 6.931±3.59 4.756±3.90 6.972±0.00 2.150±1.02 7.403±0.00 2.071±0.84 7.076±0.00 N/A 13.435±9.06 6.963±1.94 13.407±0.89
ENST00000528220 19.429±0.00 27.672±0.00 N/A 3.129±0.00 21.642±0.00 11.182±8.07 N/A 2.166±0.00 3.854±1.95 N/A 7.095±4.05 23.105±5.93 33.283±10.14 41.532±11.50
ENST00000530192 N/A N/A 4.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531596 12.869±0.00 N/A N/A 6.059±0.00 2.900±0.00 14.326±0.00 9.655±0.00 10.901±7.74 3.954±1.83 15.595±0.00 11.111±2.08 N/A N/A N/A
ENST00000533698 N/A 36.629±0.00 N/A N/A N/A N/A 14.455±0.00 3.724±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006401 IDA RNA catabolic process
GO:0032299 IDA ribonuclease H2 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089637 RNASEH2C (1 of 2) ribonuclease H2, subunit C protein_coding Danio_rerio
ENSDARG00000091285 RNASEH2C (2 of 2) ribonuclease H2, subunit C protein_coding Danio_rerio
ENSMUSG00000024925 Rnaseh2c ribonuclease H2, subunit C protein_coding Mus_musculus

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