C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173914 RBM4B 9606 - 11:66664998-66677921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310046 RBM4B-001 66664998-66677921 protein_coding
  ENST00000524637 RBM4B-008 66668971-66677837 protein_coding
  ENST00000525754 RBM4B-002 66664998-66677748 protein_coding
  ENST00000528106 RBM4B-005 66665548-66668685 nonsense_mediated_decay
  ENST00000529195 RBM4B-006 66665906-66668835 processed_transcript
  ENST00000531036 RBM4B-003 66675560-66677877 protein_coding
  ENST00000531969 RBM4B-004 66665295-66677824 protein_coding
  ENST00000534198 RBM4B-007 66665454-66666495 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryPlacentaTestisENST00000310046ENST00000525754
Transcript ID Bladder Brain Kidney Liver Ovary Placenta Testis
ENST00000310046 N/A 4.550±0.00 5.661±0.00 7.914±0.00 12.478±6.26 9.533±0.00 16.942±2.84
ENST00000525754 1.942±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0004 CGP 11:66616626-66666682
CIL_0003YM CIL_0003YM_0003 CGP 11:66638617-66677921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0006417 ISS regulation of translation
GO:0007623 ISS circadian rhythm
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010628 IEA positive regulation of gene expression
GO:0032922 ISS circadian regulation of gene expression
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022129 rbm4.3 RNA binding motif protein 4.3 protein_coding Danio_rerio
ENSDARG00000036386 rbm4.1 RNA binding motif protein 4.1 protein_coding Danio_rerio
ENSDARG00000055080 rbm4.2 RNA binding motif protein 4.2 protein_coding Danio_rerio
ENSMUSG00000033760 Rbm4b RNA binding motif protein 4B protein_coding Mus_musculus

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