C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310046 RBM4B-001 ENSG00000173914 9606 - 11:66664998-66677921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverOvaryPlacentaTestisENST00000310046
Transcript ID Brain Kidney Liver Ovary Placenta Testis
ENST00000310046 4.550±0.00 5.661±0.00 7.914±0.00 12.478±6.26 9.533±0.00 16.942±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0004 CGP 11:66616626-66666682
CIL_0003YM CIL_0003YM_0003 CGP 11:66638617-66677921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0006417 ISS regulation of translation
GO:0007623 ISS circadian rhythm
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0032922 ISS circadian regulation of gene expression
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036744 Rbm4b-001 protein_coding Mus_musculus 0 2185
ENSMUST00000182821 Rbm4b-004 retained_intron Mus_musculus 0 1616
ENSMUST00000180248 Rbm4-001 protein_coding Mus_musculus 0 1112
ENSMUST00000172000 Gm21992-001 protein_coding Mus_musculus 0 1110
ENSMUST00000179189 Rbm4-004 protein_coding Mus_musculus 0 900
ENSMUST00000183332 Rbm4b-007 retained_intron Mus_musculus 0 815
ENSMUST00000182200 Rbm4b-002 nonsense_mediated_decay Mus_musculus 0 808
ENSMUST00000183008 Rbm4b-005 processed_transcript Mus_musculus 0 778
ENSMUST00000164376 Rbm4-005 protein_coding Mus_musculus 0 776
ENSMUST00000182065 Rbm4b-003 retained_intron Mus_musculus 0 773
ENSMUST00000178727 Gm21992-003 retained_intron Mus_musculus 0 643
ENSMUST00000179820 Rbm4-003 retained_intron Mus_musculus 0 643
ENSMUST00000164209 Rbm4-006 protein_coding Mus_musculus 0 643
ENSMUST00000178615 Rbm4-002 protein_coding Mus_musculus 0 643
ENSMUST00000182324 Rbm4b-006 processed_transcript Mus_musculus 0 377
ENSMUST00000177776 Gm21992-006 processed_transcript Mus_musculus 0 270

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