C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033760 Rbm4b 10090 + 19:4756543-4767065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036744 Rbm4b-001 4756571-4765940 protein_coding
  ENSMUST00000182065 Rbm4b-003 4756565-4761342 retained_intron
  ENSMUST00000182200 Rbm4b-002 4756581-4764130 nonsense_mediated_decay
  ENSMUST00000182324 Rbm4b-006 4764465-4765643 processed_transcript
  ENSMUST00000182821 Rbm4b-004 4756543-4762876 retained_intron
  ENSMUST00000183008 Rbm4b-005 4756564-4760701 processed_transcript
  ENSMUST00000183332 Rbm4b-007 4761396-4767065 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036744ENSMUST00000182065ENSMUST00000182200ENSMUST00000182821ENSMUST00000183332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036744 2.516±0.70 1.683±0.29 4.115±0.00 16.546±10.74 2.220±0.61 1.163±0.26 1.326±0.17 3.834±0.53 2.821±0.57 2.817±0.43 0.845±0.00 4.555±0.90 2.511±1.06 20.677±8.50
ENSMUST00000182065 1.217±0.50 N/A 3.723±0.00 4.267±2.70 1.077±0.06 0.927±0.05 0.522±0.11 1.100±0.03 1.819±0.96 0.984±0.09 0.609±0.06 1.349±0.18 1.456±0.80 N/A
ENSMUST00000182200 0.525±0.00 1.400±0.03 N/A N/A 2.040±0.00 N/A N/A N/A 0.655±0.00 N/A N/A 1.873±0.00 N/A N/A
ENSMUST00000182821 3.633±1.58 4.949±0.70 N/A 5.915±0.00 5.142±0.69 4.717±0.90 1.786±0.32 3.782±1.12 2.198±0.78 3.535±1.15 N/A 6.510±1.38 2.281±0.28 68.628±7.20
ENSMUST00000183332 1.907±1.08 1.501±0.27 3.175±0.00 4.810±2.98 2.355±0.57 1.673±0.34 0.619±0.06 1.101±0.12 1.780±0.84 1.660±0.55 0.451±0.00 1.780±1.09 1.410±1.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0006 CGP 19:4742913-4811612
CIL_0003YM CIL_0003YM_0005 CGP 19:4756543-4793901

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0006417 IDA regulation of translation
GO:0007623 IDA circadian rhythm
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010628 IDA positive regulation of gene expression
GO:0032922 IDA circadian regulation of gene expression
GO:0043153 IDA entrainment of circadian clock by photoperiod
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022129 rbm4.3 RNA binding motif protein 4.3 protein_coding Danio_rerio
ENSDARG00000036386 rbm4.1 RNA binding motif protein 4.1 protein_coding Danio_rerio
ENSDARG00000055080 rbm4.2 RNA binding motif protein 4.2 protein_coding Danio_rerio
ENSG00000173914 RBM4B RNA binding motif protein 4B protein_coding Homo_sapiens

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