C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173933 RBM4 9606 + 11:66638617-66666682 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310092 RBM4-001 66638617-66646469 protein_coding
  ENST00000396053 RBM4-008 66638667-66666682 protein_coding
  ENST00000398692 RBM4-010 66638698-66646468 protein_coding
  ENST00000408993 RBM4-002 66638672-66646452 protein_coding
  ENST00000409406 RBM4-003 66638935-66646467 protein_coding
  ENST00000483858 RBM4-007 66638698-66641192 protein_coding
  ENST00000506523 RBM4-009 66638718-66649930 protein_coding
  ENST00000510173 RBM4-014 66638705-66644089 protein_coding
  ENST00000515838 RBM4-015 66643750-66646468 processed_transcript
  ENST00000528039 RBM4-012 66638716-66646468 processed_transcript
  ENST00000530235 RBM4-013 66638720-66646439 protein_coding
  ENST00000532968 RBM4-011 66638727-66640289 protein_coding
  ENST00000578778 RBM4-019 66638691-66652372 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310092ENST00000408993ENST00000483858ENST00000528039
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310092 N/A 3.248±0.00 5.448±0.00 N/A 14.057±0.00 9.434±0.00 27.890±0.00 9.840±1.26 10.223±0.00 10.791±0.00 19.857±10.05 21.372±8.95 18.682±0.00
ENST00000408993 N/A N/A 8.387±1.60 N/A N/A N/A N/A N/A 25.339±0.00 6.562±1.27 N/A 14.558±0.42 N/A
ENST00000483858 9.416±0.00 3.668±0.00 N/A 7.226±0.00 N/A 2.377±0.00 N/A N/A 8.634±0.00 N/A 5.374±1.80 7.757±0.00 16.452±0.00
ENST00000528039 31.385±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.324±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0004 CGP 11:66616626-66666682
CIL_0003YM CIL_0003YM_0003 CGP 11:66638617-66677921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0002190 IDA cap-independent translational initiation
GO:0002192 IDA IRES-dependent translational initiation
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010494 IDA cytoplasmic stress granule
GO:0016607 IDA nuclear speck
GO:0017148 IDA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0032055 IDA negative regulation of translation in response to stress
GO:0035198 IDA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0044822 IDA poly(A) RNA binding
GO:0045947 IDA negative regulation of translational initiation
GO:0046685 IDA response to arsenic-containing substance
GO:0046822 IDA regulation of nucleocytoplasmic transport
GO:0051149 IDA positive regulation of muscle cell differentiation
GO:0051403 IDA stress-activated MAPK cascade
GO:0097157 IDA pre-mRNA intronic binding
GO:0097158 IDA pre-mRNA intronic pyrimidine-rich binding
GO:0097167 ISS circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022129 rbm4.3 RNA binding motif protein 4.3 protein_coding Danio_rerio
ENSDARG00000036386 rbm4.1 RNA binding motif protein 4.1 protein_coding Danio_rerio
ENSDARG00000055080 rbm4.2 RNA binding motif protein 4.2 protein_coding Danio_rerio
ENSMUSG00000094936 Rbm4 RNA binding motif protein 4 protein_coding Mus_musculus
ENSMUSG00000096370 Gm21992 predicted gene 21992 protein_coding Mus_musculus

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