C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: predicted gene 21992
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000096370 Gm21992 10090 - 19:4742913-4811612 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000172000 Gm21992-001 4787369-4811508 protein_coding
  ENSMUST00000177776 Gm21992-006 4792635-4802002 processed_transcript
  ENSMUST00000178353 Gm21992-004 4742913-4811612 nonsense_mediated_decay
  ENSMUST00000178404 Gm21992-005 4785153-4811212 protein_coding
  ENSMUST00000178727 Gm21992-003 4791159-4811603 retained_intron
  ENSMUST00000179909 Gm21992-002 4785152-4811508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178353ENSMUST00000178404ENSMUST00000178727ENSMUST00000179909
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178353 N/A N/A 4.064±0.00 N/A N/A N/A N/A N/A N/A 0.697±0.07 N/A N/A N/A
ENSMUST00000178404 N/A N/A N/A 23.292±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.203±0.00
ENSMUST00000179909 13.876±3.93 24.924±3.43 10.117±0.00 12.112±1.58 27.790±0.00 8.221±2.71 17.895±1.27 15.316±3.19 15.141±0.00 N/A 39.307±3.03 15.128±2.28 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0006 CGP 19:4742913-4811612

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0002190 ISS cap-independent translational initiation
GO:0002192 ISS IRES-dependent translational initiation
GO:0003676 IEA nucleic acid binding
GO:0003723 ISS RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0016607 ISS nuclear speck
GO:0017148 ISS negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0032055 ISS negative regulation of translation in response to stress
GO:0035198 ISS miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA
GO:0036002 IDA pre-mRNA binding
GO:0043153 IDA entrainment of circadian clock by photoperiod
GO:0045947 ISS negative regulation of translational initiation
GO:0046685 ISS response to arsenic-containing substance
GO:0046822 IDA regulation of nucleocytoplasmic transport
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051149 ISS positive regulation of muscle cell differentiation
GO:0051403 ISS stress-activated MAPK cascade
GO:0097157 ISS pre-mRNA intronic binding
GO:0097158 ISS pre-mRNA intronic pyrimidine-rich binding
GO:0097167 IDA circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022129 rbm4.3 RNA binding motif protein 4.3 protein_coding Danio_rerio
ENSDARG00000036386 rbm4.1 RNA binding motif protein 4.1 protein_coding Danio_rerio
ENSDARG00000055080 rbm4.2 RNA binding motif protein 4.2 protein_coding Danio_rerio
ENSG00000173933 RBM4 RNA binding motif protein 4 protein_coding Homo_sapiens

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