C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530235 RBM4-013 ENSG00000173933 9606 + 11:66638720-66646439 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0004 CGP 11:66616626-66666682
CIL_0003YM CIL_0003YM_0003 CGP 11:66638617-66677921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0002190 IDA cap-independent translational initiation
GO:0002192 IDA IRES-dependent translational initiation
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010494 IDA cytoplasmic stress granule
GO:0016607 IDA nuclear speck
GO:0017148 IDA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0032055 IDA negative regulation of translation in response to stress
GO:0035198 IDA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0044822 IDA poly(A) RNA binding
GO:0045947 IDA negative regulation of translational initiation
GO:0046685 IDA response to arsenic-containing substance
GO:0046822 IDA regulation of nucleocytoplasmic transport
GO:0051149 IDA positive regulation of muscle cell differentiation
GO:0051403 IDA stress-activated MAPK cascade
GO:0097157 IDA pre-mRNA intronic binding
GO:0097158 IDA pre-mRNA intronic pyrimidine-rich binding
GO:0097167 ISS circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178615 Rbm4-002 protein_coding Mus_musculus 0 961
ENSMUST00000164209 Rbm4-006 protein_coding Mus_musculus 0 878
ENSMUST00000178727 Gm21992-003 retained_intron Mus_musculus 0 632
ENSMUST00000179820 Rbm4-003 retained_intron Mus_musculus 0 632
ENSMUST00000180248 Rbm4-001 protein_coding Mus_musculus 0 628
ENSMUST00000182200 Rbm4b-002 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000182065 Rbm4b-003 retained_intron Mus_musculus 0 614
ENSMUST00000036744 Rbm4b-001 protein_coding Mus_musculus 0 610
ENSMUST00000183008 Rbm4b-005 processed_transcript Mus_musculus 0 610
ENSMUST00000182821 Rbm4b-004 retained_intron Mus_musculus 0 610
ENSMUST00000172000 Gm21992-001 protein_coding Mus_musculus 0 588
ENSMUST00000164376 Rbm4-005 protein_coding Mus_musculus 0 588
ENSMUST00000179189 Rbm4-004 protein_coding Mus_musculus 0 588
ENSMUST00000178404 Gm21992-005 protein_coding Mus_musculus 0 339
ENSMUST00000179909 Gm21992-002 protein_coding Mus_musculus 0 339
ENSMUST00000177776 Gm21992-006 processed_transcript Mus_musculus 0 276

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