C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: podocan
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174348 PODN 9606 + 1:53062052-53085502 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312553 PODN-001 53062213-53085502 protein_coding
  ENST00000371500 PODN-005 53062182-53085502 protein_coding
  ENST00000395871 PODN-201 53062052-53085501 protein_coding
  ENST00000471210 PODN-002 53070909-53073754 processed_transcript
  ENST00000471285 PODN-003 53078611-53082094 processed_transcript
  ENST00000490650 PODN-004 53078650-53082188 processed_transcript
  ENST00000618387 PODN-202 53062213-53085501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312553ENST00000371500ENST00000395871ENST00000471210ENST00000490650
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312553 N/A 1.157±0.00 4.143±0.00 0.565±0.00 0.921±0.00 2.435±0.00 6.419±1.75 25.651±0.00 2.251±0.21 55.997±55.86 12.930±3.71 53.866±47.96
ENST00000371500 N/A 0.044±0.00 N/A 0.656±0.00 0.305±0.00 N/A N/A N/A N/A N/A 3.432±0.00 N/A
ENST00000395871 N/A 0.356±0.00 N/A N/A N/A 0.622±0.00 N/A N/A N/A N/A N/A N/A
ENST00000471210 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490650 N/A 0.361±0.00 N/A N/A 1.159±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WC CIL_0006WC_0002 CGP 1:53062052-53142632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0008285 IDA negative regulation of cell proliferation
GO:0030336 IDA negative regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019025 podn podocan protein_coding Danio_rerio
ENSMUSG00000028600 Podn podocan protein_coding Mus_musculus

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