C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: podocan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371500 PODN-005 ENSG00000174348 9606 + 1:53062182-53085502 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartPlacentaENST00000371500
Transcript ID Brain Colon Heart Placenta
ENST00000371500 0.044±0.00 0.656±0.00 0.305±0.00 3.432±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WC CIL_0006WC_0002 CGP 1:53062052-53142632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0008285 IDA negative regulation of cell proliferation
GO:0030336 IDA negative regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106708 Podn-002 protein_coding Mus_musculus 0 2122
ENSMUST00000044248 Podn-201 protein_coding Mus_musculus 0 2119
ENSMUST00000106709 Podn-001 protein_coding Mus_musculus 0 2119
ENSMUST00000145491 Podn-003 processed_transcript Mus_musculus 0 1519
ENSMUST00000146851 Podn-004 protein_coding Mus_musculus 0 1236
ENSMUST00000130026 Podn-007 protein_coding Mus_musculus 0 401

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