C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: propionyl CoA carboxylase, alpha polypeptide
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175198 PCCA 9606 + 13:100089015-100530435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376279 PCCA-201 100089015-100530432 protein_coding
  ENST00000376285 PCCA-001 100089083-100530435 protein_coding
  ENST00000376286 PCCA-202 100089015-100530432 protein_coding
  ENST00000413170 PCCA-005 100368499-100491817 protein_coding
  ENST00000424527 PCCA-003 100293224-100425731 protein_coding
  ENST00000428969 PCCA-007 100515427-100530432 protein_coding
  ENST00000443601 PCCA-002 100305776-100340259 protein_coding
  ENST00000458283 PCCA-004 100368472-100530432 protein_coding
  ENST00000485946 PCCA-006 100149201-100161625 processed_transcript
  ENST00000621936 PCCA-008 100489968-100491817 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376279ENST00000376285ENST00000376286ENST00000443601ENST00000621936
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376279 N/A N/A N/A 3.546±0.00 N/A N/A N/A 5.505±0.00 N/A N/A N/A 2.389±0.00 N/A 1.620±0.00
ENST00000376285 4.238±0.00 1.991±0.00 8.597±0.00 6.466±0.00 2.055±0.15 5.397±3.30 3.419±1.09 8.138±3.15 3.659±1.66 2.196±0.00 1.629±0.37 5.835±3.94 3.928±2.25 2.299±0.03
ENST00000376286 N/A 3.069±0.00 N/A 1.303±0.00 N/A 4.496±0.00 N/A 11.246±0.00 8.269±0.00 1.536±0.30 1.782±0.00 1.600±0.37 0.618±0.00 2.971±0.00
ENST00000443601 N/A N/A N/A N/A 7.946±0.00 N/A N/A N/A N/A N/A N/A 14.965±0.00 N/A N/A
ENST00000621936 N/A N/A N/A N/A 1.325±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LI CIL_0007LI_0001 UCNEbase 13:99687864-100523501
CIL_0004G2 CIL_0004G2_0002 CGP 13:99981772-100530435
CIL_0000WI CIL_0000WI_0001 CGP 13:100089015-100589528

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004075 IEA biotin carboxylase activity
GO:0004658 IEA propionyl-CoA carboxylase activity
GO:0005524 IEA ATP binding
GO:0005576 IEA extracellular region
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0005829 TAS cytosol
GO:0006635 TAS fatty acid beta-oxidation
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006768 TAS biotin metabolic process
GO:0008152 IEA metabolic process
GO:0008716 IEA D-alanine-D-alanine ligase activity
GO:0009374 TAS biotin binding
GO:0016874 IEA ligase activity
GO:0019626 TAS short-chain fatty acid catabolic process
GO:0019836 IEA hemolysis by symbiont of host erythrocytes
GO:0019899 IPI enzyme binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028982 pcca propionyl-Coenzyme A carboxylase, alpha polypeptide protein_coding Danio_rerio
ENSMUSG00000041650 Pcca propionyl-Coenzyme A carboxylase, alpha polypeptide protein_coding Mus_musculus

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