C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: propionyl CoA carboxylase, alpha polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376285 PCCA-001 ENSG00000175198 9606 + 13:100089083-100530435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376285 4.238±0.00 1.991±0.00 8.597±0.00 6.466±0.00 2.055±0.15 5.397±3.30 3.419±1.09 8.138±3.15 3.659±1.66 2.196±0.00 1.629±0.37 5.835±3.94 3.928±2.25 2.299±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LI CIL_0007LI_0001 UCNEbase 13:99687864-100523501
CIL_0004G2 CIL_0004G2_0002 CGP 13:99981772-100530435
CIL_0000WI CIL_0000WI_0001 CGP 13:100089015-100589528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004075 IEA biotin carboxylase activity
GO:0004658 IEA propionyl-CoA carboxylase activity
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0005829 TAS cytosol
GO:0006635 TAS fatty acid beta-oxidation
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006768 TAS biotin metabolic process
GO:0008152 IEA metabolic process
GO:0008716 IEA D-alanine-D-alanine ligase activity
GO:0009374 TAS biotin binding
GO:0016874 IEA ligase activity
GO:0019626 TAS short-chain fatty acid catabolic process
GO:0019899 IPI enzyme binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038374 Pcca-001 protein_coding Mus_musculus 0 2591
ENSMUST00000177312 Pcca-013 nonsense_mediated_decay Mus_musculus 0 723
ENSMUST00000143240 Pcca-007 processed_transcript Mus_musculus 0 564
ENSMUST00000140517 Pcca-002 processed_transcript Mus_musculus 0 496
ENSMUST00000148172 Pcca-006 retained_intron Mus_musculus 0 427
ENSMUST00000138836 Pcca-012 retained_intron Mus_musculus 0 370
ENSMUST00000152383 Pcca-003 nonsense_mediated_decay Mus_musculus 0 363
ENSMUST00000154206 Pcca-005 protein_coding Mus_musculus 0 337
ENSMUST00000135578 Pcca-008 protein_coding Mus_musculus 0 276
ENSMUST00000132444 Pcca-011 protein_coding Mus_musculus 2.00386e-43 182

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