C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175224 ATG13 9606 + 11:46617527-46674818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359513 ATG13-006 46617596-46674818 protein_coding
  ENST00000395549 ATG13-032 46617791-46657191 protein_coding
  ENST00000524625 ATG13-001 46617577-46674520 protein_coding
  ENST00000525009 ATG13-018 46664000-46669441 protein_coding
  ENST00000525850 ATG13-011 46648727-46657618 processed_transcript
  ENST00000526485 ATG13-021 46672795-46674513 processed_transcript
  ENST00000526508 ATG13-004 46617563-46674520 protein_coding
  ENST00000526715 ATG13-022 46617545-46630022 processed_transcript
  ENST00000527907 ATG13-014 46656953-46667865 retained_intron
  ENST00000528145 ATG13-012 46644337-46656398 retained_intron
  ENST00000528494 ATG13-008 46617600-46672726 protein_coding
  ENST00000528704 ATG13-015 46657060-46659402 retained_intron
  ENST00000528984 ATG13-013 46656951-46664149 retained_intron
  ENST00000529395 ATG13-019 46665509-46669532 nonsense_mediated_decay
  ENST00000529655 ATG13-003 46617541-46673041 protein_coding
  ENST00000530500 ATG13-005 46617563-46672660 protein_coding
  ENST00000530942 ATG13-023 46617578-46630028 processed_transcript
  ENST00000531933 ATG13-017 46659422-46672773 protein_coding
  ENST00000532067 ATG13-020 46667872-46668882 nonsense_mediated_decay
  ENST00000533316 ATG13-016 46659335-46668890 retained_intron
  ENST00000533325 ATG13-024 46617549-46650216 protein_coding
  ENST00000534610 ATG13-007 46617582-46660029 retained_intron
  ENST00000577256 ATG13-031 46617568-46645889 protein_coding
  ENST00000578626 ATG13-034 46617568-46645369 protein_coding
  ENST00000579280 ATG13-025 46617535-46625364 processed_transcript
  ENST00000580238 ATG13-027 46617527-46645367 protein_coding
  ENST00000581416 ATG13-026 46617536-46645419 protein_coding
  ENST00000581438 ATG13-030 46617557-46644331 protein_coding
  ENST00000582547 ATG13-028 46617585-46645383 protein_coding
  ENST00000583249 ATG13-029 46617557-46645350 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395549ENST00000524625ENST00000526508ENST00000528494ENST00000529655ENST00000530500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395549 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.538±0.00 N/A 2.832±0.00 N/A N/A
ENST00000524625 11.097±0.00 10.273±0.00 0.538±0.00 5.481±3.73 7.011±6.32 5.411±0.00 5.520±0.00 16.229±0.00 5.130±4.51 3.690±2.70 6.206±0.00 7.964±5.39 11.492±4.08 11.952±0.00
ENST00000526508 N/A N/A 0.541±0.00 4.590±2.42 N/A 1.175±0.68 N/A 0.568±0.00 N/A N/A 1.985±0.00 2.280±0.45 N/A 7.034±1.62
ENST00000528494 N/A N/A N/A N/A N/A N/A 4.127±0.00 N/A N/A N/A 2.878±2.26 N/A N/A N/A
ENST00000529655 7.217±0.00 N/A N/A 7.198±3.42 2.856±0.00 1.462±0.00 0.913±0.00 1.409±0.00 0.945±0.00 0.986±0.00 0.336±0.00 1.169±0.00 6.491±0.00 14.449±1.85
ENST00000530500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.387±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000407 ISS pre-autophagosomal structure
GO:0005515 IPI protein binding
GO:0005829 IBA cytosol
GO:0019901 IPI protein kinase binding
GO:0034273 IBA ATG1/UKL1 signaling complex
GO:0070969 IPI ULK1-ATG13-FIP200 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036040 atg13 ATG13 autophagy related 13 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027244 Atg13 autophagy related 13 protein_coding Mus_musculus

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