C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524625 ATG13-001 ENSG00000175224 9606 + 11:46617577-46674520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000524625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000524625 11.097±0.00 10.273±0.00 0.538±0.00 5.481±3.73 7.011±6.32 5.411±0.00 5.520±0.00 16.229±0.00 5.130±4.51 3.690±2.70 6.206±0.00 7.964±5.39 11.492±4.08 11.952±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000407 ISS pre-autophagosomal structure
GO:0005515 IPI protein binding
GO:0005829 IBA cytosol
GO:0019901 IPI protein kinase binding
GO:0034273 IBA ATG1/UKL1 signaling complex
GO:0070969 IPI ULK1-ATG13-FIP200 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076803 Atg13-002 protein_coding Mus_musculus 0 1895
ENSMUST00000028678 Atg13-001 protein_coding Mus_musculus 0 1035
ENSMUST00000139548 Atg13-006 processed_transcript Mus_musculus 0 475
ENSMUST00000126000 Atg13-005 processed_transcript Mus_musculus 0 464
ENSMUST00000153631 Atg13-004 processed_transcript Mus_musculus 0 366
ENSMUST00000136412 Atg13-003 processed_transcript Mus_musculus 0 300
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000001 64

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