C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027244 Atg13 10090 - 2:91674618-91710576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028678 Atg13-001 91674619-91710519 protein_coding
  ENSMUST00000076803 Atg13-002 91674618-91710576 protein_coding
  ENSMUST00000126000 Atg13-005 91676318-91682229 processed_transcript
  ENSMUST00000136412 Atg13-003 91688713-91705734 processed_transcript
  ENSMUST00000139548 Atg13-006 91676283-91679695 processed_transcript
  ENSMUST00000153631 Atg13-004 91679387-91685252 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028678ENSMUST00000076803ENSMUST00000139548ENSMUST00000153631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028678 N/A N/A N/A 4.986±1.35 N/A N/A 3.643±0.79 N/A N/A N/A 1.919±0.33 N/A N/A 3.953±0.61
ENSMUST00000076803 9.319±1.71 27.779±3.72 14.050±0.95 6.466±2.54 10.516±3.29 15.255±1.24 4.591±1.45 11.653±1.38 10.693±4.26 11.613±4.22 2.518±1.47 15.829±4.53 12.599±8.26 9.948±4.40
ENSMUST00000139548 N/A N/A N/A 32.458±0.00 N/A N/A N/A N/A N/A N/A N/A 17.346±0.00 18.528±4.16 15.264±0.00
ENSMUST00000153631 N/A N/A N/A N/A 8.583±0.00 N/A 11.529±2.60 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000182 CIL_000182_0002 CGP 2:91649860-91710576
CIL_000181 CIL_000181_0002 CGP 2:91674618-91721545

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0000407 IDA pre-autophagosomal structure
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0019901 IBA protein kinase binding
GO:0034273 IBA ATG1/UKL1 signaling complex
GO:0070969 IPI ULK1-ATG13-FIP200 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036040 atg13 ATG13 autophagy related 13 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000175224 ATG13 autophagy related 13 protein_coding Homo_sapiens

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