C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176102 CSTF3 9606 - 11:33077188-33162371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323959 CSTF3-001 33084584-33161465 protein_coding
  ENST00000431742 CSTF3-003 33141465-33161491 protein_coding
  ENST00000438862 CSTF3-002 33140966-33161531 protein_coding
  ENST00000524556 CSTF3-008 33141608-33161495 nonsense_mediated_decay
  ENST00000524775 CSTF3-004 33141708-33162371 protein_coding
  ENST00000524827 CSTF3-007 33105879-33161460 protein_coding
  ENST00000526480 CSTF3-006 33134413-33161421 processed_transcript
  ENST00000528865 CSTF3-005 33077188-33085904 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323959ENST00000431742ENST00000438862ENST00000524556ENST00000528865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323959 2.264±0.00 5.871±0.00 1.943±0.00 4.069±0.95 4.193±0.00 2.381±0.00 1.336±0.82 3.060±1.86 2.474±0.35 2.505±0.00 1.523±0.00 5.626±2.09 4.657±1.91 13.608±5.41
ENST00000431742 N/A N/A N/A N/A N/A 7.445±0.00 N/A 2.501±0.00 N/A N/A N/A 14.078±0.00 3.574±0.00 N/A
ENST00000438862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.512±0.00 N/A N/A
ENST00000524556 N/A N/A N/A 24.202±0.00 N/A N/A N/A N/A N/A N/A 2.498±0.00 N/A N/A N/A
ENST00000528865 N/A N/A N/A N/A N/A N/A N/A N/A 4.642±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SB CIL_0008SB_0001 VISTA 11:32486574-33087503

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018904 cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 protein_coding Danio_rerio
ENSMUSG00000027176 Cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 protein_coding Mus_musculus

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