C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323959 CSTF3-001 ENSG00000176102 9606 - 11:33084584-33161465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323959 2.264±0.00 5.871±0.00 1.943±0.00 4.069±0.95 4.193±0.00 2.381±0.00 1.336±0.82 3.060±1.86 2.474±0.35 2.505±0.00 1.523±0.00 5.626±2.09 4.657±1.91 13.608±5.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SB CIL_0008SB_0001 VISTA 11:32486574-33087503

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028599 Cstf3-001 protein_coding Mus_musculus 0 3705
ENSMUST00000124944 Cstf3-004 processed_transcript Mus_musculus 0 514
ENSMUST00000122900 Cstf3-003 retained_intron Mus_musculus 0 446
ENSMUST00000131761 Cstf3-005 processed_transcript Mus_musculus 0 372
ENSMUST00000126539 Cstf3-006 processed_transcript Mus_musculus 0 254
ENSMUST00000137961 Cstf3-002 retained_intron Mus_musculus 0 252

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