C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage stimulation factor, 3' pre-RNA, subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027176 Cstf3 10090 + 2:104590523-104665429 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028599 Cstf3-001 104590523-104665429 protein_coding
  ENSMUST00000122900 Cstf3-003 104590532-104611406 retained_intron
  ENSMUST00000124944 Cstf3-004 104655540-104663438 processed_transcript
  ENSMUST00000126539 Cstf3-006 104663666-104664739 processed_transcript
  ENSMUST00000131761 Cstf3-005 104663138-104664179 processed_transcript
  ENSMUST00000137961 Cstf3-002 104590618-104609429 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028599ENSMUST00000122900ENSMUST00000126539ENSMUST00000131761ENSMUST00000137961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028599 2.349±1.04 1.001±0.27 4.959±0.69 10.067±2.47 1.375±0.36 1.667±0.72 1.202±0.20 1.848±0.48 5.288±4.78 2.199±0.45 1.258±0.33 4.586±3.22 11.062±2.13 5.769±1.90
ENSMUST00000122900 N/A 1.358±0.48 1.669±0.23 5.061±2.87 0.757±0.06 N/A 0.440±0.09 N/A 1.554±0.75 1.396±0.05 0.374±0.11 1.245±0.00 N/A N/A
ENSMUST00000126539 N/A 2.390±0.61 N/A N/A 1.916±0.00 N/A N/A N/A 2.266±0.00 N/A N/A N/A N/A N/A
ENSMUST00000131761 N/A 2.574±0.31 N/A N/A 5.460±0.00 N/A N/A 3.021±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000137961 N/A N/A 7.516±0.00 N/A N/A N/A N/A N/A N/A N/A 1.220±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018904 cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 protein_coding Danio_rerio
ENSG00000176102 CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa protein_coding Homo_sapiens

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