C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: charged multivesicular body protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325167 CHMP6-001 ENSG00000176108 9606 + 17:80991841-81000133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325167 8.673±0.00 12.185±0.00 0.493±0.00 3.252±2.71 8.076±0.00 2.327±1.39 4.684±0.00 7.975±0.00 3.865±3.65 2.626±2.12 2.877±2.47 7.940±5.89 16.736±6.45 5.430±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042G CIL_00042G_0001 CGP 17:80544819-81009517
CIL_0003UC CIL_0003UC_0002 CGP 17:80991598-81117432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0007034 IEA vacuolar transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0047485 IPI protein N-terminus binding
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026434 Chmp6-001 protein_coding Mus_musculus 0 732
ENSMUST00000124199 Chmp6-003 protein_coding Mus_musculus 0 250

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