C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lamin B2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176619 LMNB2 9606 - 19:2427638-2456996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325327 LMNB2-001 2428166-2456996 protein_coding
  ENST00000475819 LMNB2-002 2429471-2431829 processed_transcript
  ENST00000490554 LMNB2-003 2432508-2434959 retained_intron
  ENST00000527409 LMNB2-006 2434295-2437158 processed_transcript
  ENST00000532465 LMNB2-008 2427638-2433899 processed_transcript
  ENST00000534495 LMNB2-007 2435003-2437121 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325327ENST00000475819ENST00000490554ENST00000532465
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325327 11.151±0.00 10.073±0.00 0.859±0.00 3.408±2.17 4.516±2.20 7.276±3.97 1.858±1.35 4.734±4.42 1.602±0.85 4.439±3.07 4.830±3.34 19.401±11.70 22.524±5.69 9.439±3.02
ENST00000475819 N/A N/A N/A N/A N/A N/A N/A N/A 3.229±0.00 N/A N/A 6.250±0.00 N/A N/A
ENST00000490554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 49.296±0.00 55.908±0.00 78.718±0.00
ENST00000532465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.692±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QN CIL_0005QN_0002 CGP 19:2389771-2427894
CIL_0001I9 CIL_0001I9_0001 CGP 19:2425624-2456996
CIL_0001IA CIL_0001IA_0001 CGP 19:2427638-2478259

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005634 IEA nucleus
GO:0005635 IEA nuclear envelope
GO:0005637 IEA nuclear inner membrane
GO:0005638 IEA lamin filament
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009933 lmnb2 lamin B2 protein_coding Danio_rerio
ENSMUSG00000062075 Lmnb2 lamin B2 protein_coding Mus_musculus

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