C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325327 LMNB2-001 ENSG00000176619 9606 - 19:2428166-2456996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325327 11.151±0.00 10.073±0.00 0.859±0.00 3.408±2.17 4.516±2.20 7.276±3.97 1.858±1.35 4.734±4.42 1.602±0.85 4.439±3.07 4.830±3.34 19.401±11.70 22.524±5.69 9.439±3.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QN CIL_0005QN_0002 CGP 19:2389771-2427894
CIL_0001I9 CIL_0001I9_0001 CGP 19:2425624-2456996
CIL_0001IA CIL_0001IA_0001 CGP 19:2427638-2478259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005634 IEA nucleus
GO:0005635 IEA nuclear envelope
GO:0005637 IEA nuclear inner membrane
GO:0005638 IEA lamin filament
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179022 Lmnb2-201 protein_coding Mus_musculus 0 1567
ENSMUST00000057623 Lmnb2-001 protein_coding Mus_musculus 0 1567
ENSMUST00000105332 Lmnb2-002 protein_coding Mus_musculus 0 911
ENSDART00000009438 lmnb2-001 protein_coding Danio_rerio 0 556
ENSMUST00000025486 Lmnb1-001 protein_coding Mus_musculus 8e-35 154

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