C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001IA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176619-ENSG00000099860 CGP 9606 19:2427638-2478259
GeneTranscriptPositionBiotype
ENSG00000099800 (TIMM13)
translocase of inner mitochondrial membrane 13 homolog (yeast) 		ENST00000215570 (TIMM13-001) 2425624-2427894 protein_coding
ENST00000591871 (TIMM13-002) 2426565-2427538 protein_coding
ENSG00000099860 (GADD45B)
growth arrest and DNA-damage-inducible, beta 		ENST00000215631 (GADD45B-001) 2476127-2478259 protein_coding
ENST00000585359 (GADD45B-007) 2476146-2477657 nonsense_mediated_decay
ENST00000586759 (GADD45B-008) 2476122-2476638 retained_intron
ENST00000587345 (GADD45B-006) 2476148-2477436 protein_coding
ENST00000587887 (GADD45B-003) 2476356-2477126 protein_coding
ENST00000592937 (GADD45B-009) 2476127-2478259 retained_intron
ENST00000593043 (GADD45B-004) 2476356-2477126 protein_coding
ENSG00000176619 (LMNB2)
lamin B2 		ENST00000325327 (LMNB2-001) 2428166-2456996 protein_coding
ENST00000475819 (LMNB2-002) 2429471-2431829 processed_transcript
ENST00000490554 (LMNB2-003) 2432508-2434959 retained_intron
ENST00000527409 (LMNB2-006) 2434295-2437158 processed_transcript
ENST00000532465 (LMNB2-008) 2427638-2433899 processed_transcript
ENST00000534495 (LMNB2-007) 2435003-2437121 processed_transcript
ENSG00000267201 (AC005624.2)
 ENST00000587826 (AC005624.2-001) 2458935-2462185 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001IA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000062075-ENSMUSG00000015312 CGP 10090 10:80901203-80932204
GeneTranscriptPositionBiotype
ENSMUSG00000015312 (Gadd45b)
growth arrest and DNA-damage-inducible 45 beta 		ENSMUST00000015456 (Gadd45b-201) 80930091-80932204 protein_coding
ENSMUSG00000062075 (Lmnb2)
lamin B2 		ENSMUST00000057623 (Lmnb2-001) 80901203-80918245 protein_coding
ENSMUST00000105332 (Lmnb2-002) 80902798-80906412 protein_coding
ENSMUST00000159094 (Lmnb2-003) 80909923-80917851 processed_transcript
ENSMUST00000179022 (Lmnb2-201) 80901364-80918245 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001IA_0001ENSG00000099800ENST00000215570ENST00000591871ENSG00000099860ENST00000215631ENST00000585359ENST00000586759ENST00000587345ENST00000587887ENST00000592937ENST00000593043ENSG00000176619ENST00000325327ENST00000475819ENST00000490554ENST00000527409ENST00000532465ENST00000534495ENSG00000267201ENST00000587826CIL_0001IA_0002ENSMUSG00000015312ENSMUST00000015456ENSMUSG00000062075ENSMUST00000057623ENSMUST00000105332ENSMUST00000159094ENSMUST00000179022
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001IA_0001ENSG00000099800ENST00000215570ENST00000591871ENSG00000099860ENST00000215631ENST00000585359ENST00000586759ENST00000592937ENSG00000176619ENST00000325327ENST00000475819ENST00000490554ENST00000532465ENSG00000267201ENST00000587826CIL_0001IA_0002ENSMUSG00000015312ENSMUST00000015456ENSMUSG00000062075ENSMUST00000057623ENSMUST00000105332ENSMUST00000179022
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099800 ENST00000215570 N/A 8.429±0.00 1.349±0.00 4.844±1.80 6.217±3.64 N/A 3.044±2.32 6.096±3.22 8.162±0.00 N/A 5.935±0.00 20.786±5.15 16.509±3.58 10.719±0.00
ENST00000591871 50.510±0.00 45.944±0.00 3.505±0.00 21.484±0.36 29.650±19.98 33.112±25.07 15.221±11.84 28.723±15.74 45.477±0.00 19.861±16.22 25.570±9.19 54.693±13.09 55.694±14.77 58.411±0.00
ENSG00000099860 ENST00000215631 61.013±0.00 44.952±0.00 4.385±0.00 33.802±26.38 17.629±4.99 31.963±29.85 12.114±11.48 37.102±34.19 30.634±23.82 189.307±180.18 12.602±0.04 72.880±69.09 78.387±13.90 21.045±12.53
ENST00000585359 29.366±0.00 N/A 1.594±0.00 29.917±0.00 N/A 19.904±17.50 N/A N/A 5.582±0.00 7.154±0.00 7.040±0.00 6.703±0.00 34.212±0.00 17.271±0.00
ENST00000586759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.953±0.00 N/A N/A
ENST00000587345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592937 N/A 23.777±0.00 N/A N/A 8.064±0.00 0.674±0.00 0.150±0.00 N/A 1.611±0.00 N/A N/A 20.138±14.67 N/A N/A
ENST00000593043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176619 ENST00000325327 11.151±0.00 10.073±0.00 0.859±0.00 3.408±2.17 4.516±2.20 7.276±3.97 1.858±1.35 4.734±4.42 1.602±0.85 4.439±3.07 4.830±3.34 19.401±11.70 22.524±5.69 9.439±3.02
ENST00000475819 N/A N/A N/A N/A N/A N/A N/A N/A 3.229±0.00 N/A N/A 6.250±0.00 N/A N/A
ENST00000490554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 49.296±0.00 55.908±0.00 78.718±0.00
ENST00000527409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.692±0.00
ENST00000534495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267201 ENST00000587826 0.258±0.00 0.187±0.00 N/A 0.120±0.00 N/A 0.095±0.00 N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.458±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015312 ENSMUST00000015456 6.804±0.69 18.785±3.03 10.902±3.79 3.744±1.49 14.441±5.72 11.156±1.99 3.803±0.46 4.303±0.62 2.870±3.84 51.217±7.07 14.905±3.16 18.618±5.99 29.658±9.76 2.921±1.20
ENSMUSG00000062075 ENSMUST00000057623 N/A 3.159±0.46 N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A N/A N/A
ENSMUST00000105332 N/A N/A N/A 5.567±0.00 N/A N/A N/A N/A N/A N/A N/A 8.595±0.00 5.127±2.17 126.037±66.70
ENSMUST00000159094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179022 5.369±2.02 7.933±1.92 5.673±0.90 17.380±6.85 4.274±1.98 17.290±3.60 2.491±0.26 3.627±0.63 6.169±4.37 3.841±1.00 1.108±0.25 11.885±3.50 6.715±2.41 6.269±0.07

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