C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176715 ACSF3 9606 + 16:89088375-89155846 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317447 ACSF3-001 89093809-89155763 protein_coding
  ENST00000378345 ACSF3-002 89093898-89154588 protein_coding
  ENST00000393145 ACSF3-020 89147567-89154586 retained_intron
  ENST00000406948 ACSF3-003 89093883-89154589 protein_coding
  ENST00000535176 ACSF3-013 89145950-89151348 protein_coding
  ENST00000537116 ACSF3-005 89136548-89155846 processed_transcript
  ENST00000537155 ACSF3-016 89145161-89154584 retained_intron
  ENST00000537290 ACSF3-009 89093855-89102648 protein_coding
  ENST00000537895 ACSF3-011 89088375-89114473 protein_coding
  ENST00000538340 ACSF3-015 89102613-89122392 protein_coding
  ENST00000540697 ACSF3-010 89093868-89133262 protein_coding
  ENST00000541755 ACSF3-023 89093904-89100767 protein_coding
  ENST00000542688 ACSF3-006 89098711-89154540 nonsense_mediated_decay
  ENST00000543676 ACSF3-014 89102696-89122832 protein_coding
  ENST00000544543 ACSF3-012 89102352-89145400 protein_coding
  ENST00000562204 ACSF3-021 89112201-89146044 processed_transcript
  ENST00000562750 ACSF3-019 89150600-89151222 processed_transcript
  ENST00000614302 ACSF3-201 89093809-89155846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378345ENST00000393145ENST00000406948ENST00000537116ENST00000537155ENST00000537290ENST00000537895ENST00000538340ENST00000540697ENST00000542688ENST00000562204ENST00000614302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378345 2.806±0.00 N/A N/A N/A N/A 5.081±0.00 N/A 2.129±0.00 3.585±0.00 2.527±0.00 3.613±0.00 N/A N/A 3.370±0.00
ENST00000393145 0.411±0.00 2.480±0.00 0.714±0.00 0.515±0.27 0.948±0.04 0.908±0.25 0.272±0.12 0.359±0.18 0.649±0.36 0.932±0.42 0.429±0.00 0.775±0.19 0.332±0.05 0.948±0.25
ENST00000406948 1.330±0.00 N/A 0.641±0.00 1.040±0.00 1.162±0.00 N/A 1.188±0.98 2.739±0.09 4.728±0.00 1.793±0.00 N/A 3.007±2.34 4.433±0.39 N/A
ENST00000537116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A
ENST00000537155 N/A N/A N/A N/A N/A N/A 0.692±0.00 5.301±0.00 N/A N/A 2.370±0.00 5.555±0.62 3.954±0.68 N/A
ENST00000537290 N/A N/A N/A N/A N/A N/A 0.908±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000537895 N/A N/A N/A 2.201±0.00 N/A N/A N/A 4.588±0.00 N/A N/A N/A N/A N/A N/A
ENST00000538340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.909±0.00 N/A N/A N/A
ENST00000540697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.073±0.00 2.117±0.00 N/A N/A
ENST00000542688 1.875±0.00 7.335±0.00 N/A 1.650±0.00 4.841±0.00 N/A 1.345±0.00 2.895±0.00 N/A 1.891±0.00 3.527±0.00 4.046±0.00 1.512±0.13 3.855±0.06
ENST00000562204 N/A N/A N/A 3.746±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614302 N/A N/A 0.623±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.051±0.09 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0006AJ CIL_0006AJ_0002 CGP 16:88874858-89155846
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_0006AI CIL_0006AI_0002 CGP 16:89088375-89195492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006631 IDA fatty acid metabolic process
GO:0006633 IDA fatty acid biosynthetic process
GO:0008152 IEA metabolic process
GO:0016878 IDA acid-thiol ligase activity
GO:0090409 IDA malonyl-CoA synthetase activity
GO:0090410 IDA malonate catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059503 CR848706.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000015016 Acsf3 acyl-CoA synthetase family member 3 protein_coding Mus_musculus

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