C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178234 GALNT11 9606 + 7:152025674-152122347 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000415421 GALNT11-002 152074986-152104892 protein_coding
  ENST00000419245 GALNT11-010 152093966-152103252 protein_coding
  ENST00000422997 GALNT11-201 152079275-152104891 protein_coding
  ENST00000423337 GALNT11-013 152025798-152103174 protein_coding
  ENST00000430044 GALNT11-008 152025693-152122347 protein_coding
  ENST00000431668 GALNT11-009 152025714-152094522 protein_coding
  ENST00000431940 GALNT11-014 152113245-152118769 nonsense_mediated_decay
  ENST00000434507 GALNT11-003 152074298-152122160 protein_coding
  ENST00000446096 GALNT11-012 152025742-152103156 protein_coding
  ENST00000447778 GALNT11-004 152025776-152113373 nonsense_mediated_decay
  ENST00000447796 GALNT11-011 152093991-152103172 protein_coding
  ENST00000482812 GALNT11-007 152025674-152103277 processed_transcript
  ENST00000491061 GALNT11-006 152107250-152119710 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000430044ENST00000431940ENST00000434507ENST00000446096ENST00000447778ENST00000491061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000430044 6.721±0.00 3.695±0.00 7.824±0.00 8.815±3.63 7.452±3.93 3.094±2.15 4.249±2.42 28.155±0.00 3.833±0.46 4.491±2.55 2.970±0.00 8.854±6.26 13.913±4.56 4.380±0.77
ENST00000431940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.513±0.00 N/A
ENST00000434507 N/A 2.059±0.00 N/A 3.759±0.27 2.212±0.00 1.658±0.00 0.746±0.00 0.892±0.00 2.619±0.00 2.456±0.00 N/A 6.178±1.43 13.549±4.95 2.306±0.00
ENST00000446096 N/A N/A N/A N/A N/A 8.069±0.00 5.718±0.00 N/A N/A N/A 6.847±0.00 N/A N/A N/A
ENST00000447778 N/A N/A N/A N/A N/A N/A N/A N/A 4.406±0.00 N/A 5.168±0.00 N/A N/A N/A
ENST00000491061 N/A N/A N/A N/A N/A 0.811±0.00 N/A N/A N/A N/A N/A 1.463±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T7 CIL_0007T7_0001 VISTA 7:151442692-152046426
CIL_0007T1 CIL_0007T1_0001 VISTA 7:151456863-152060019
CIL_00027A CIL_00027A_0001 CGP 7:152025674-152436005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005112 IDA Notch binding
GO:0007220 ISS Notch receptor processing
GO:0007368 ISS determination of left/right symmetry
GO:0008152 IEA metabolic process
GO:0008593 ISS regulation of Notch signaling pathway
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0016740 IEA transferase activity
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding
GO:0060271 ISS cilium morphogenesis
GO:0061314 ISS Notch signaling involved in heart development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063636 galnt11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) protein_coding Danio_rerio
ENSMUSG00000038072 Galnt11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 protein_coding Mus_musculus

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