C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD23 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179262 RAD23A 9606 + 19:12945855-12953642 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316856 RAD23A-001 12945876-12953623 protein_coding
  ENST00000586375 RAD23A-010 12948689-12953405 nonsense_mediated_decay
  ENST00000586534 RAD23A-002 12945888-12953642 protein_coding
  ENST00000588329 RAD23A-006 12945866-12949282 retained_intron
  ENST00000588826 RAD23A-007 12946005-12949576 processed_transcript
  ENST00000590881 RAD23A-008 12949084-12953595 protein_coding
  ENST00000591467 RAD23A-009 12952364-12952990 retained_intron
  ENST00000591499 RAD23A-003 12945855-12953269 nonsense_mediated_decay
  ENST00000592268 RAD23A-005 12945892-12953591 protein_coding
  ENST00000593114 RAD23A-004 12945894-12953613 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316856ENST00000586375ENST00000586534ENST00000588826ENST00000591499ENST00000593114
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316856 N/A N/A N/A 2.194±0.00 1.551±0.00 2.003±0.00 N/A 1.265±0.00 1.646±0.00 11.349±0.00 0.975±0.00 N/A N/A
ENST00000586375 N/A 1.993±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586534 N/A N/A 3.044±0.00 N/A 2.117±0.00 N/A 3.511±0.00 N/A N/A N/A N/A N/A N/A
ENST00000588826 43.046±0.00 4.146±0.00 22.639±0.00 N/A N/A N/A N/A 14.424±0.00 39.220±0.00 239.664±195.77 2.443±0.00 35.410±5.46 39.260±0.00
ENST00000591499 N/A 1.116±0.00 N/A N/A N/A N/A N/A 9.837±7.91 N/A 469.771±0.00 16.218±10.22 17.724±3.79 N/A
ENST00000593114 N/A N/A N/A N/A N/A N/A N/A 1.132±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0003684 IEA damaged DNA binding
GO:0003697 TAS single-stranded DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006289 IDA:IEA nucleotide-excision repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0016032 IEA viral process
GO:0031593 IDA polyubiquitin binding
GO:0032434 IDA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045070 IMP positive regulation of viral genome replication
GO:1990381 IPI ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020001 rad23aa RAD23 homolog Aa (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000003813 Rad23a RAD23a homolog (S. cerevisiae) protein_coding Mus_musculus

Loading