C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD23a homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003813 Rad23a 10090 - 8:84834019-84840665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003911 Rad23a-002 84834652-84840641 protein_coding
  ENSMUST00000109761 Rad23a-001 84834911-84840665 protein_coding
  ENSMUST00000125711 Rad23a-004 84838299-84840636 retained_intron
  ENSMUST00000128035 Rad23a-003 84835620-84840665 protein_coding
  ENSMUST00000134395 Rad23a-006 84837722-84838666 retained_intron
  ENSMUST00000144675 Rad23a-007 84834019-84838047 protein_coding
  ENSMUST00000144994 Rad23a-005 84837735-84838680 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003911ENSMUST00000109761ENSMUST00000125711ENSMUST00000128035ENSMUST00000144675ENSMUST00000144994
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003911 9.719±1.93 27.584±0.00 8.834±1.44 6.855±1.02 12.353±3.02 10.785±1.69 8.430±0.50 8.422±1.57 16.549±10.21 9.902±1.78 22.123±3.84 12.333±1.31 11.501±3.63 8.961±0.83
ENSMUST00000109761 9.141±1.39 N/A 11.202±0.36 7.980±4.49 11.819±2.51 11.068±4.26 6.105±2.19 13.226±2.03 21.698±13.88 8.240±1.19 38.434±5.24 11.460±0.65 11.519±3.12 10.909±3.99
ENSMUST00000125711 N/A N/A N/A N/A 14.708±0.00 N/A 11.541±1.04 N/A N/A N/A N/A N/A N/A 12.914±0.00
ENSMUST00000128035 15.507±2.47 N/A N/A N/A 20.593±0.44 17.244±1.67 11.064±0.28 9.631±1.71 16.981±14.65 13.359±0.85 N/A 26.537±4.33 11.873±0.00 27.900±1.38
ENSMUST00000144675 N/A N/A N/A 50.577±0.00 N/A N/A N/A N/A N/A N/A N/A 96.181±0.00 64.393±19.71 40.491±0.00
ENSMUST00000144994 N/A N/A N/A 102.392±0.00 N/A N/A N/A N/A N/A N/A N/A 104.123±0.00 78.170±30.87 69.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0003684 IEA damaged DNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006289 IEA nucleotide-excision repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0031593 IEA polyubiquitin binding
GO:0032434 IEA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045070 IEA positive regulation of viral genome replication
GO:1990381 IEA ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020001 rad23aa RAD23 homolog Aa (S. cerevisiae) protein_coding Danio_rerio
ENSG00000179262 RAD23A RAD23 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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