C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSEN54 tRNA splicing endonuclease subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182173 TSEN54 9606 + 17:75516060-75524739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333213 TSEN54-001 75516525-75524739 protein_coding
  ENST00000434205 TSEN54-005 75516060-75519047 protein_coding
  ENST00000545228 TSEN54-012 75521993-75524693 protein_coding
  ENST00000577197 TSEN54-014 75523602-75524733 retained_intron
  ENST00000578415 TSEN54-008 75516812-75522115 nonsense_mediated_decay
  ENST00000579449 TSEN54-013 75522826-75524420 retained_intron
  ENST00000580013 TSEN54-010 75516536-75521438 processed_transcript
  ENST00000583173 TSEN54-007 75516561-75523287 nonsense_mediated_decay
  ENST00000583454 TSEN54-006 75516526-75517475 retained_intron
  ENST00000583634 TSEN54-009 75516970-75517651 retained_intron
  ENST00000583818 TSEN54-011 75516795-75521897 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333213ENST00000434205ENST00000545228ENST00000577197ENST00000578415ENST00000579449ENST00000583173ENST00000583818
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333213 2.148±0.00 3.180±0.00 N/A N/A 2.594±0.00 1.388±0.00 1.538±0.00 4.032±0.00 2.362±2.20 7.341±0.00 2.379±0.00 5.987±0.82 4.319±1.21 3.021±0.39
ENST00000434205 N/A N/A N/A N/A 0.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545228 N/A N/A N/A N/A 2.181±0.00 0.632±0.00 N/A N/A 1.545±0.00 6.028±0.00 1.147±0.00 8.797±3.32 1.716±0.59 6.865±0.00
ENST00000577197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.651±0.00 N/A N/A
ENST00000578415 N/A N/A 0.375±0.00 0.370±0.00 0.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579449 N/A N/A N/A 0.937±0.00 N/A N/A N/A 0.670±0.00 N/A N/A N/A N/A N/A N/A
ENST00000583173 N/A N/A N/A 1.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583818 N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IY CIL_0007IY_0001 CGP 17:75500261-75524739
CIL_0007IP CIL_0007IP_0001 CGP 17:75516060-75575208

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036844 tsen54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000020781 Tsen54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) protein_coding Mus_musculus

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