C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN54 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333213 TSEN54-001 ENSG00000182173 9606 + 17:75516525-75524739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333213
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333213 2.148±0.00 3.180±0.00 2.594±0.00 1.388±0.00 1.538±0.00 4.032±0.00 2.362±2.20 7.341±0.00 2.379±0.00 5.987±0.82 4.319±1.21 3.021±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IY CIL_0007IY_0001 CGP 17:75500261-75524739
CIL_0007IP CIL_0007IP_0001 CGP 17:75516060-75575208

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021134 Tsen54-001 protein_coding Mus_musculus 0 1439
ENSMUST00000106481 Tsen54-002 protein_coding Mus_musculus 0 1116
ENSMUST00000141748 Tsen54-003 retained_intron Mus_musculus 0 662
ENSMUST00000128266 Tsen54-004 retained_intron Mus_musculus 0 472
ENSMUST00000129765 Tsen54-006 retained_intron Mus_musculus 0 440
ENSMUST00000136343 Tsen54-005 protein_coding Mus_musculus 7e-37 159

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