C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA splicing endonuclease 54 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020781 Tsen54 10090 + 11:115814724-115823094 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021134 Tsen54-001 115814724-115823094 protein_coding
  ENSMUST00000106481 Tsen54-002 115814724-115823094 protein_coding
  ENSMUST00000128266 Tsen54-004 115814805-115820507 retained_intron
  ENSMUST00000129765 Tsen54-006 115814746-115815545 retained_intron
  ENSMUST00000136343 Tsen54-005 115815698-115821699 protein_coding
  ENSMUST00000141748 Tsen54-003 115814771-115820528 retained_intron
  ENSMUST00000154304 Tsen54-007 115820710-115823089 protein_coding
  ENSMUST00000157061 Tsen54-008 115820846-115822269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021134ENSMUST00000106481ENSMUST00000128266ENSMUST00000129765ENSMUST00000136343ENSMUST00000141748ENSMUST00000154304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021134 8.113±2.04 6.625±1.14 8.277±1.09 6.871±4.95 5.893±1.63 10.936±1.97 3.990±1.19 11.851±1.96 5.886±3.22 7.324±0.27 2.767±0.63 8.029±2.75 9.236±5.65 2.060±0.77
ENSMUST00000106481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.283±0.00 N/A
ENSMUST00000128266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.251±0.00 2.830±0.00 N/A N/A
ENSMUST00000129765 N/A 12.975±2.33 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.842±1.16 N/A 1.502±0.00
ENSMUST00000136343 N/A N/A N/A 2.505±0.00 N/A N/A N/A N/A N/A N/A 1.097±0.34 17.274±0.00 16.051±1.66 1.304±0.00
ENSMUST00000141748 N/A 5.198±0.96 N/A N/A 3.522±0.00 4.484±0.35 N/A N/A N/A 3.338±0.00 N/A 6.203±1.03 6.153±0.25 1.795±0.00
ENSMUST00000154304 2.566±0.00 11.867±2.12 N/A 1.092±0.00 6.833±1.13 7.443±0.34 N/A 4.092±0.33 2.278±0.39 3.852±0.61 1.161±0.00 10.515±2.20 N/A 0.445±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IY CIL_0007IY_0002 CGP 11:115799183-115823094
CIL_0007IP CIL_0007IP_0002 CGP 11:115814724-115855780

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036844 tsen54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000182173 TSEN54 TSEN54 tRNA splicing endonuclease subunit protein_coding Homo_sapiens

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