C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4-NOT transcription complex, subunit 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182973 CNOT10 9606 + 3:32685145-32773875 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328834 CNOT10-001 32685145-32773875 protein_coding
  ENST00000331889 CNOT10-003 32685145-32773714 protein_coding
  ENST00000416457 CNOT10-004 32704818-32773714 nonsense_mediated_decay
  ENST00000430408 CNOT10-012 32734822-32769964 protein_coding
  ENST00000435630 CNOT10-002 32685220-32773616 nonsense_mediated_decay
  ENST00000454516 CNOT10-201 32695541-32773871 protein_coding
  ENST00000455381 CNOT10-010 32708697-32727874 nonsense_mediated_decay
  ENST00000463006 CNOT10-007 32695541-32708817 processed_transcript
  ENST00000463697 CNOT10-011 32715996-32727808 processed_transcript
  ENST00000466103 CNOT10-009 32703863-32708775 processed_transcript
  ENST00000468599 CNOT10-015 32764248-32765304 retained_intron
  ENST00000471003 CNOT10-013 32753261-32769960 processed_transcript
  ENST00000473064 CNOT10-017 32769023-32769964 processed_transcript
  ENST00000476967 CNOT10-018 32769665-32773512 retained_intron
  ENST00000479397 CNOT10-014 32764221-32769962 retained_intron
  ENST00000481526 CNOT10-016 32764132-32769964 retained_intron
  ENST00000485136 CNOT10-008 32703791-32713349 retained_intron
  ENST00000494439 CNOT10-006 32685319-32716311 processed_transcript
  ENST00000556853 CNOT10-019 32685319-32716311 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328834ENST00000331889ENST00000416457ENST00000430408ENST00000435630ENST00000454516ENST00000471003ENST00000485136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328834 N/A 1.701±0.00 N/A N/A 2.151±0.00 0.953±0.00 0.630±0.26 N/A 1.534±0.85 1.392±0.00 1.350±0.00 4.848±3.05 3.512±1.14 N/A
ENST00000331889 0.919±0.00 N/A 1.020±0.00 1.932±0.47 3.655±0.00 1.970±0.22 0.998±0.18 1.726±1.24 2.354±0.00 1.567±0.00 2.353±0.00 1.333±0.00 0.774±0.01 6.943±0.00
ENST00000416457 1.247±0.00 1.337±0.00 N/A N/A N/A N/A N/A 1.100±0.00 N/A 0.781±0.00 N/A 3.094±0.00 2.900±0.00 N/A
ENST00000430408 N/A N/A N/A 3.173±0.00 3.591±0.00 6.318±0.00 N/A N/A N/A N/A N/A N/A N/A 17.927±0.00
ENST00000435630 1.340±0.00 2.258±0.00 N/A 0.724±0.00 1.793±0.00 1.675±0.00 1.086±0.00 1.741±0.00 0.956±0.00 N/A 1.442±0.00 2.783±0.00 2.122±0.00 5.603±0.00
ENST00000454516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.671±6.43
ENST00000471003 N/A N/A 2.631±0.00 N/A N/A N/A N/A 1.462±0.00 N/A N/A N/A N/A N/A N/A
ENST00000485136 N/A N/A 2.454±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020K CIL_00020K_0002 CGP 3:32685145-32897826

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058528 cnot10 CCR4-NOT transcription complex, subunit 10 protein_coding Danio_rerio
ENSMUSG00000056167 Cnot10 CCR4-NOT transcription complex, subunit 10 protein_coding Mus_musculus

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