C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331889 CNOT10-003 ENSG00000182973 9606 + 3:32685145-32773714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331889
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331889 0.919±0.00 1.020±0.00 1.932±0.47 3.655±0.00 1.970±0.22 0.998±0.18 1.726±1.24 2.354±0.00 1.567±0.00 2.353±0.00 1.333±0.00 0.774±0.01 6.943±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020K CIL_00020K_0002 CGP 3:32685145-32897826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070117 Cnot10-201 protein_coding Mus_musculus 0 1890

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