C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328834 CNOT10-001 ENSG00000182973 9606 + 3:32685145-32773875 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000328834
Transcript ID Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000328834 1.701±0.00 2.151±0.00 0.953±0.00 0.630±0.26 1.534±0.85 1.392±0.00 1.350±0.00 4.848±3.05 3.512±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020K CIL_00020K_0002 CGP 3:32685145-32897826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070117 Cnot10-201 protein_coding Mus_musculus 0 2817

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