C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: arylformamidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183077 AFMID 9606 + 17:78187317-78207701 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327898 AFMID-001 78187362-78207701 protein_coding
  ENST00000409257 AFMID-005 78187317-78207701 protein_coding
  ENST00000585419 AFMID-014 78202721-78207052 processed_transcript
  ENST00000586542 AFMID-007 78187364-78205081 protein_coding
  ENST00000586731 AFMID-015 78187401-78197560 protein_coding
  ENST00000587750 AFMID-011 78202509-78207202 processed_transcript
  ENST00000588199 AFMID-010 78187362-78207187 nonsense_mediated_decay
  ENST00000588800 AFMID-004 78187362-78207240 protein_coding
  ENST00000589107 AFMID-008 78187362-78204852 nonsense_mediated_decay
  ENST00000589256 AFMID-002 78187362-78197560 protein_coding
  ENST00000589664 AFMID-012 78202572-78207405 processed_transcript
  ENST00000591256 AFMID-006 78187358-78205051 protein_coding
  ENST00000591538 AFMID-013 78190711-78202734 processed_transcript
  ENST00000591952 AFMID-009 78187362-78207329 protein_coding
  ENST00000592988 AFMID-003 78187362-78204039 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327898ENST00000409257ENST00000585419ENST00000586542ENST00000587750ENST00000588199ENST00000588800ENST00000589664ENST00000591256ENST00000591952ENST00000592988
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327898 0.629±0.00 N/A N/A N/A 1.701±0.00 N/A N/A N/A 12.012±0.00 2.563±0.00 0.238±0.00 3.028±0.00 N/A N/A
ENST00000409257 N/A N/A 5.952±0.00 N/A N/A N/A N/A 10.105±1.19 29.673±0.00 N/A N/A 1.958±0.55 2.601±0.94 N/A
ENST00000585419 N/A N/A N/A N/A N/A 1.419±0.00 N/A 13.219±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586542 N/A N/A N/A N/A N/A 0.597±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587750 3.797±0.00 6.910±0.00 N/A 8.992±0.00 10.086±0.00 4.600±0.00 3.615±0.00 39.847±0.00 61.811±0.00 6.949±0.00 0.938±0.00 7.999±1.85 5.451±0.00 5.170±0.22
ENST00000588199 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.485±0.00 N/A N/A N/A N/A
ENST00000588800 1.416±0.00 N/A N/A N/A N/A N/A 0.481±0.00 N/A N/A N/A 1.373±0.00 N/A N/A N/A
ENST00000589664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.905±0.00 N/A N/A
ENST00000591256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.119±0.00 N/A N/A
ENST00000591952 N/A N/A N/A 8.312±0.00 N/A 2.830±0.00 4.640±0.00 N/A N/A 9.764±0.00 N/A 4.525±0.00 N/A N/A
ENST00000592988 0.558±0.00 N/A N/A N/A N/A N/A N/A N/A 0.518±0.00 N/A 0.234±0.00 1.548±0.87 N/A 1.527±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0003U7 CIL_0003U7_0002 CGP 17:78174075-78207701
CIL_0006JS CIL_0006JS_0001 CGP 17:78187317-78225636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004061 IEA arylformamidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006569 TAS tryptophan catabolic process
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity
GO:0019441 IEA tryptophan catabolic process to kynurenine
GO:0034354 IEA 'de novo' NAD biosynthetic process from tryptophan
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030548 afmid arylformamidase protein_coding Danio_rerio
ENSDARG00000086180 CU929356.4 Kynurenine formamidase protein_coding Danio_rerio
ENSMUSG00000017718 Afmid arylformamidase protein_coding Mus_musculus

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