C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003U7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000086561-ENSDARG00000086561 CGP 7955 11:45718829-45908399
GeneTranscriptPositionBiotype
ENSDARG00000030548 (afmid)
arylformamidase 		ENSDART00000043267 (afmid-001) 45728046-45737194 protein_coding
ENSDART00000125387 (afmid-201) 45724182-45737193 protein_coding
ENSDART00000131998 (afmid-002) 45723972-45735661 protein_coding
ENSDART00000133940 (afmid-003) 45723878-45735379 protein_coding
ENSDART00000134767 (afmid-004) 45727972-45729698 retained_intron
ENSDART00000143939 (afmid-005) 45728099-45733387 retained_intron
ENSDARG00000030752 (syngr2b)
synaptogyrin 2b 		ENSDART00000045311 (syngr2b-201) 45891512-45900335 protein_coding
ENSDARG00000060545 (TMC8)
transmembrane channel-like 8 		ENSDART00000085448 (TMC8-201) 45852272-45864148 protein_coding
ENSDARG00000086225 (syngr2b)
synaptogyrin 2b 		ENSDART00000076415 (syngr2b-202) 45704914-45903305 protein_coding
ENSDART00000136494 (syngr2b-002) 45705745-45717531 protein_coding
ENSDART00000138975 (syngr2b-003) 45705676-45714602 protein_coding
ENSDART00000139230 (syngr2b-001) 45705705-45714738 protein_coding
ENSDARG00000086561 (tk1)
thymidine kinase 1, soluble 		ENSDART00000023794 (tk1-201) 45718831-45908399 protein_coding
ENSDART00000111554 (tk1-202) 45720763-45723671 protein_coding
ENSDART00000139922 (tk1-001) 45718829-45723780 protein_coding
ENSDARG00000087157 (cant1b)
calcium activated nucleotidase 1b 		ENSDART00000128942 (cant1b-202) 45745609-45749825 protein_coding
ENSDART00000133229 (cant1b-001) 45738027-45750476 protein_coding
ENSDART00000137334 (cant1b-002) 45741241-45749504 protein_coding
ENSDARG00000096077 (si:dkey-93h22.6)
si:dkey-93h22.6 		ENSDART00000150690 (si:dkey-93h22.6-001) 45750938-45766019 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003U7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167900-ENSG00000183077 CGP 9606 17:78174075-78207701
GeneTranscriptPositionBiotype
ENSG00000167900 (TK1)
thymidine kinase 1, soluble 		ENST00000301634 (TK1-001) 78174075-78187233 protein_coding
ENST00000586613 (TK1-004) 78174926-78187063 protein_coding
ENST00000588734 (TK1-002) 78174121-78187233 protein_coding
ENST00000590430 (TK1-005) 78174830-78187038 protein_coding
ENST00000590862 (TK1-006) 78174702-78187036 protein_coding
ENST00000592126 (TK1-003) 78175069-78187021 retained_intron
ENSG00000183077 (AFMID)
arylformamidase 		ENST00000327898 (AFMID-001) 78187362-78207701 protein_coding
ENST00000409257 (AFMID-005) 78187317-78207701 protein_coding
ENST00000585419 (AFMID-014) 78202721-78207052 processed_transcript
ENST00000586542 (AFMID-007) 78187364-78205081 protein_coding
ENST00000586731 (AFMID-015) 78187401-78197560 protein_coding
ENST00000587750 (AFMID-011) 78202509-78207202 processed_transcript
ENST00000588199 (AFMID-010) 78187362-78207187 nonsense_mediated_decay
ENST00000588800 (AFMID-004) 78187362-78207240 protein_coding
ENST00000589107 (AFMID-008) 78187362-78204852 nonsense_mediated_decay
ENST00000589256 (AFMID-002) 78187362-78197560 protein_coding
ENST00000589664 (AFMID-012) 78202572-78207405 processed_transcript
ENST00000591256 (AFMID-006) 78187358-78205051 protein_coding
ENST00000591538 (AFMID-013) 78190711-78202734 processed_transcript
ENST00000591952 (AFMID-009) 78187362-78207329 protein_coding
ENST00000592988 (AFMID-003) 78187362-78204039 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003U7_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025574-ENSMUSG00000017718 CGP 10090 11:117815526-117839908
GeneTranscriptPositionBiotype
ENSMUSG00000017718 (Afmid)
arylformamidase 		ENSMUST00000073388 (Afmid-001) 117825924-117839908 protein_coding
ENSMUST00000131268 (Afmid-007) 117832273-117835524 retained_intron
ENSMUST00000139945 (Afmid-005) 117832104-117835417 retained_intron
ENSMUST00000148016 (Afmid-003) 117832230-117837231 retained_intron
ENSMUST00000149668 (Afmid-002) 117825974-117837234 protein_coding
ENSMUST00000153850 (Afmid-006) 117825981-117832650 retained_intron
ENSMUSG00000025574 (Tk1)
thymidine kinase 1 		ENSMUST00000026661 (Tk1-001) 117815526-117826092 protein_coding
ENSMUST00000129852 (Tk1-002) 117822458-117825847 retained_intron
ENSMUST00000141939 (Tk1-007) 117815624-117816654 retained_intron
ENSMUST00000150027 (Tk1-005) 117824834-117825817 retained_intron
ENSMUST00000153298 (Tk1-003) 117821718-117825867 retained_intron
ENSMUST00000153872 (Tk1-004) 117815905-117817424 retained_intron
ENSMUST00000154790 (Tk1-006) 117821640-117825837 retained_intron
ENSMUSG00000093485 (Gm20708)
predicted gene 20708 		ENSMUST00000132298 (Gm20708-001) 117809668-117839904 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003U7_0001ENSDARG00000030548ENSDART00000043267ENSDART00000125387ENSDART00000131998ENSDART00000133940ENSDART00000134767ENSDART00000143939ENSDARG00000030752ENSDART00000045311ENSDARG00000060545ENSDART00000085448ENSDARG00000086225ENSDART00000076415ENSDART00000136494ENSDART00000138975ENSDART00000139230ENSDARG00000086561ENSDART00000023794ENSDART00000111554ENSDART00000139922ENSDARG00000087157ENSDART00000128942ENSDART00000133229ENSDART00000137334ENSDARG00000096077ENSDART00000150690CIL_0003U7_0002ENSG00000167900ENST00000301634ENST00000586613ENST00000588734ENST00000590430ENST00000590862ENST00000592126ENSG00000183077ENST00000327898ENST00000409257ENST00000585419ENST00000586542ENST00000586731ENST00000587750ENST00000588199ENST00000588800ENST00000589107ENST00000589256ENST00000589664ENST00000591256ENST00000591538ENST00000591952ENST00000592988CIL_0003U7_0003ENSMUSG00000017718ENSMUST00000073388ENSMUST00000131268ENSMUST00000139945ENSMUST00000148016ENSMUST00000149668ENSMUST00000153850ENSMUSG00000025574ENSMUST00000026661ENSMUST00000129852ENSMUST00000141939ENSMUST00000150027ENSMUST00000153298ENSMUST00000153872ENSMUST00000154790ENSMUSG00000093485ENSMUST00000132298
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003U7_0001ENSDARG00000030548ENSDART00000043267ENSDART00000125387ENSDARG00000030752ENSDART00000045311ENSDARG00000060545ENSDART00000085448ENSDARG00000086225ENSDART00000076415ENSDART00000136494ENSDART00000138975ENSDART00000139230ENSDARG00000086561ENSDART00000023794ENSDART00000139922ENSDARG00000087157ENSDART00000128942ENSDART00000133229ENSDART00000137334ENSDARG00000096077ENSDART00000150690CIL_0003U7_0002ENSG00000167900ENST00000301634ENST00000586613ENST00000588734ENST00000590862ENST00000592126ENSG00000183077ENST00000327898ENST00000409257ENST00000585419ENST00000586542ENST00000587750ENST00000588199ENST00000588800ENST00000589664ENST00000591256ENST00000591952ENST00000592988CIL_0003U7_0003ENSMUSG00000017718ENSMUST00000073388ENSMUSG00000025574ENSMUST00000026661ENSMUST00000129852ENSMUSG00000093485ENSMUST00000132298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030548 ENSDART00000043267 N/A N/A N/A 4.123±0.67 N/A N/A 3.772±1.58 1.982±1.65 0.341±0.00 N/A 12.074±0.00 N/A N/A N/A
ENSDART00000125387 N/A N/A N/A 8.238±4.33 N/A N/A 0.823±0.30 1.713±1.38 1.021±0.00 N/A N/A N/A N/A N/A
ENSDART00000131998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000030752 ENSDART00000045311 N/A N/A N/A 2.684±2.01 N/A N/A 2.516±1.95 0.397±0.00 0.286±0.00 N/A 28.977±0.00 N/A N/A N/A
ENSDARG00000060545 ENSDART00000085448 N/A N/A N/A 0.346±0.14 N/A N/A 1.925±1.33 N/A 0.102±0.00 N/A 0.961±0.00 N/A N/A N/A
ENSDARG00000086225 ENSDART00000076415 N/A N/A N/A 0.374±0.24 N/A N/A 1.958±1.69 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136494 N/A N/A N/A 0.322±0.17 N/A N/A 2.424±1.06 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138975 N/A N/A N/A N/A N/A N/A 1.530±0.41 N/A 0.075±0.00 N/A N/A N/A N/A N/A
ENSDART00000139230 N/A N/A N/A 1.642±1.70 N/A N/A 3.214±2.74 N/A 0.336±0.00 N/A 34.518±0.00 N/A N/A N/A
ENSDARG00000086561 ENSDART00000023794 N/A N/A N/A 0.470±0.17 N/A N/A 0.377±0.33 9.057±6.66 0.123±0.00 N/A N/A N/A N/A N/A
ENSDART00000111554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139922 N/A N/A N/A 0.129±0.01 N/A N/A 0.087±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSDARG00000087157 ENSDART00000128942 N/A N/A N/A 0.479±0.00 N/A N/A 0.055±0.00 N/A 0.054±0.00 N/A 0.222±0.00 N/A N/A N/A
ENSDART00000133229 N/A N/A N/A 0.093±0.05 N/A N/A 0.181±0.12 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137334 N/A N/A N/A 0.219±0.16 N/A N/A 0.128±0.00 1.443±0.12 N/A N/A N/A N/A N/A N/A
ENSDARG00000096077 ENSDART00000150690 N/A N/A N/A 1.020±0.88 N/A N/A 1.958±0.27 3.426±1.83 0.219±0.00 N/A 0.476±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167900 ENST00000301634 1.389±0.00 2.028±0.00 N/A 0.486±0.00 1.974±0.00 3.570±0.00 0.533±0.42 10.320±0.00 N/A 5.670±0.00 N/A 9.257±8.87 14.840±4.43 2.061±0.20
ENST00000586613 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.552±0.00 N/A 1.122±0.00 N/A N/A
ENST00000588734 N/A 1.034±0.00 N/A N/A N/A N/A N/A N/A 0.112±0.00 1.235±0.00 0.198±0.00 0.519±0.00 N/A 0.358±0.00
ENST00000590430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590862 0.735±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592126 N/A N/A N/A N/A 0.438±0.00 N/A N/A N/A N/A N/A 0.511±0.00 14.531±0.00 8.807±0.00 N/A
ENSG00000183077 ENST00000327898 0.629±0.00 N/A N/A N/A 1.701±0.00 N/A N/A N/A 12.012±0.00 2.563±0.00 0.238±0.00 3.028±0.00 N/A N/A
ENST00000409257 N/A N/A 5.952±0.00 N/A N/A N/A N/A 10.105±1.19 29.673±0.00 N/A N/A 1.958±0.55 2.601±0.94 N/A
ENST00000585419 N/A N/A N/A N/A N/A 1.419±0.00 N/A 13.219±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586542 N/A N/A N/A N/A N/A 0.597±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587750 3.797±0.00 6.910±0.00 N/A 8.992±0.00 10.086±0.00 4.600±0.00 3.615±0.00 39.847±0.00 61.811±0.00 6.949±0.00 0.938±0.00 7.999±1.85 5.451±0.00 5.170±0.22
ENST00000588199 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.485±0.00 N/A N/A N/A N/A
ENST00000588800 1.416±0.00 N/A N/A N/A N/A N/A 0.481±0.00 N/A N/A N/A 1.373±0.00 N/A N/A N/A
ENST00000589107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.905±0.00 N/A N/A
ENST00000591256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.119±0.00 N/A N/A
ENST00000591538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591952 N/A N/A N/A 8.312±0.00 N/A 2.830±0.00 4.640±0.00 N/A N/A 9.764±0.00 N/A 4.525±0.00 N/A N/A
ENST00000592988 0.558±0.00 N/A N/A N/A N/A N/A N/A N/A 0.518±0.00 N/A 0.234±0.00 1.548±0.87 N/A 1.527±0.58
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017718 ENSMUST00000073388 N/A N/A 6.842±0.74 0.575±0.00 4.297±0.00 N/A N/A 37.076±2.27 56.470±24.69 N/A N/A 2.143±0.00 N/A 2.803±0.19
ENSMUST00000131268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025574 ENSMUST00000026661 17.398±0.43 N/A N/A 19.937±10.38 N/A N/A N/A N/A 88.296±52.51 N/A N/A 13.115±4.18 49.399±6.48 1.000±0.00
ENSMUST00000129852 N/A N/A N/A 0.295±0.00 N/A N/A N/A N/A N/A N/A N/A 1.891±0.00 N/A N/A
ENSMUST00000141939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093485 ENSMUST00000132298 N/A N/A N/A 0.827±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.958±0.00

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