C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: four and a half LIM domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183386 FHL3 9606 - 1:37996770-38005606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373016 FHL3-001 37996770-38005505 protein_coding
  ENST00000475084 FHL3-005 37997186-38005502 processed_transcript
  ENST00000477194 FHL3-004 37997345-38005606 processed_transcript
  ENST00000483132 FHL3-003 37998718-37999432 processed_transcript
  ENST00000485803 FHL3-002 37996770-38005502 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373016ENST00000475084ENST00000477194ENST00000483132ENST00000485803
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373016 4.558±0.00 4.666±0.00 N/A 12.241±0.00 7.224±0.00 1.711±1.40 2.876±2.72 0.803±0.00 2.758±2.49 235.934±184.41 6.173±6.51 7.436±3.00 N/A
ENST00000475084 N/A N/A N/A N/A N/A N/A N/A 0.734±0.00 0.131±0.00 N/A 20.827±0.00 21.132±0.00 9.502±0.00
ENST00000477194 N/A N/A 1.687±0.00 1.068±0.00 N/A N/A N/A 0.667±0.00 N/A 99.004±86.40 N/A N/A 4.201±0.00
ENST00000483132 N/A N/A N/A 0.787±0.00 N/A 0.413±0.00 2.961±0.00 N/A 0.488±0.00 N/A 0.621±0.00 N/A N/A
ENST00000485803 5.034±0.00 19.408±0.00 2.340±1.83 42.202±0.00 14.416±0.00 2.277±0.00 N/A 0.897±0.00 9.037±0.00 444.899±0.00 11.280±11.73 2.771±0.00 9.953±6.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095Y CIL_00095Y_0001 VISTA 1:37729017-38330016
CIL_0007UI CIL_0007UI_0001 VISTA 1:37794522-38395934
CIL_0008NZ CIL_0008NZ_0001 VISTA 1:37861857-38463593
CIL_0008EP CIL_0008EP_0001 VISTA 1:37891108-38491954
CIL_000892 CIL_000892_0001 VISTA 1:37897137-38498368
CIL_0007QI CIL_0007QI_0001 VISTA 1:37946403-38547845
CIL_0008ZP CIL_0008ZP_0001 VISTA 1:37962513-38566844
CIL_0007QK CIL_0007QK_0001 VISTA 1:37970270-38571704

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IDA focal adhesion
GO:0007517 TAS muscle organ development
GO:0008270 IEA zinc ion binding
GO:0030018 IEA Z disc
GO:0030036 IEA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034643 fhl3a four and a half LIM domains 3a protein_coding Danio_rerio
ENSDARG00000059158 fhl3b four and a half LIM domains 3b protein_coding Danio_rerio
ENSMUSG00000032643 Fhl3 four and a half LIM domains 3 protein_coding Mus_musculus

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