C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: four and a half LIM domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373016 FHL3-001 ENSG00000183386 9606 - 1:37996770-38005505 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000373016
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000373016 4.558±0.00 4.666±0.00 12.241±0.00 7.224±0.00 1.711±1.40 2.876±2.72 0.803±0.00 2.758±2.49 235.934±184.41 6.173±6.51 7.436±3.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095Y CIL_00095Y_0001 VISTA 1:37729017-38330016
CIL_0007UI CIL_0007UI_0001 VISTA 1:37794522-38395934
CIL_0008NZ CIL_0008NZ_0001 VISTA 1:37861857-38463593
CIL_0008EP CIL_0008EP_0001 VISTA 1:37891108-38491954
CIL_000892 CIL_000892_0001 VISTA 1:37897137-38498368
CIL_0007QI CIL_0007QI_0001 VISTA 1:37946403-38547845
CIL_0008ZP CIL_0008ZP_0001 VISTA 1:37962513-38566844
CIL_0007QK CIL_0007QK_0001 VISTA 1:37970270-38571704

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IDA focal adhesion
GO:0007517 TAS muscle organ development
GO:0008270 IEA zinc ion binding
GO:0030018 IEA Z disc
GO:0030036 IEA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106199 Fhl3-002 protein_coding Mus_musculus 0 1166
ENSMUST00000038684 Fhl3-001 protein_coding Mus_musculus 0 1033
ENSMUST00000145942 Fhl3-003 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000141865 Gm13898-001 processed_pseudogene Mus_musculus 0 198

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