C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000892_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs790 VISTA 9606 1:37897137-38498368
GeneTranscriptPositionBiotype
ENSG00000183386 (FHL3)
four and a half LIM domains 3 		ENST00000373016 (FHL3-001) 37996770-38005505 protein_coding
ENST00000475084 (FHL3-005) 37997186-38005502 processed_transcript
ENST00000477194 (FHL3-004) 37997345-38005606 processed_transcript
ENST00000483132 (FHL3-003) 37998718-37999432 processed_transcript
ENST00000485803 (FHL3-002) 37996770-38005502 processed_transcript
ENSG00000183431 (SF3A3)
splicing factor 3a, subunit 3, 60kDa 		ENST00000373019 (SF3A3-001) 37956975-37990921 protein_coding
ENST00000460925 (SF3A3-004) 37969387-37979199 processed_transcript
ENST00000461869 (SF3A3-007) 37978990-37990075 processed_transcript
ENST00000462258 (SF3A3-002) 37984118-37989973 processed_transcript
ENST00000470585 (SF3A3-005) 37979391-37989995 processed_transcript
ENST00000487062 (SF3A3-003) 37958063-37960693 processed_transcript
ENST00000488934 (SF3A3-006) 37979465-37980789 processed_transcript
ENST00000489537 (SF3A3-008) 37978723-37989650 processed_transcript
ENSG00000183520 (UTP11L)
UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) 		ENST00000373014 (UTP11L-001) 38012742-38024824 protein_coding
ENST00000483182 (UTP11L-003) 38009258-38019109 processed_transcript
ENST00000486563 (UTP11L-004) 38012734-38016976 processed_transcript
ENST00000488453 (UTP11L-002) 38016583-38023801 processed_transcript
ENSG00000185668 (POU3F1)
POU class 3 homeobox 1 		ENST00000373012 (POU3F1-001) 38043827-38046794 protein_coding
ENSG00000212541 (RNU6-510P)
RNA, U6 small nuclear 510, pseudogene 		ENST00000391239 (RNU6-510P-201) 37991462-37991569 snRNA
ENSG00000223589 (RP5-884C9.3)
 ENST00000424719 (RP5-884C9.3-001) 38080572-38080911 processed_pseudogene
ENSG00000224592 (RP5-884C9.2)
 ENST00000428151 (RP5-884C9.2-001) 38047425-38119025 lincRNA
ENST00000432922 (RP5-884C9.2-002) 38047314-38105734 lincRNA
ENSG00000237290 (LINC01343)
long intergenic non-protein coding RNA 1343 		ENST00000431311 (LINC01343-001) 38209034-38214767 lincRNA
ENSG00000238063 (RP11-329N22.1)
 ENST00000452971 (RP11-329N22.1-001) 38475196-38476484 lincRNA
ENSG00000277168 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000616313 (Metazoa_SRP.1-415) 37953508-37953780 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_000892_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs790 VISTA 10090 4:124220131-124821365
GeneTranscriptPositionBiotype
ENSMUSG00000028890 (Mtf1)
metal response element binding transcription factor 1 		ENSMUST00000030723 (Mtf1-201) 124802549-124849800 protein_coding
ENSMUST00000106193 (Mtf1-001) 124802104-124849379 protein_coding
ENSMUST00000138807 (Mtf1-002) 124802549-124820227 protein_coding
ENSMUST00000147452 (Mtf1-003) 124802582-124805378 retained_intron
ENSMUST00000175875 (Mtf1-004) 124802678-124804740 protein_coding
ENSMUSG00000028894 (Inpp5b)
inositol polyphosphate-5-phosphatase B 		ENSMUST00000094782 (Inpp5b-001) 124741850-124801511 protein_coding
ENSMUST00000135971 (Inpp5b-008) 124795285-124797894 processed_transcript
ENSMUST00000142446 (Inpp5b-003) 124799548-124801110 processed_transcript
ENSMUST00000142652 (Inpp5b-007) 124769328-124782467 processed_transcript
ENSMUST00000145359 (Inpp5b-006) 124769222-124782414 processed_transcript
ENSMUST00000153837 (Inpp5b-004) 124741858-124751479 protein_coding
ENSMUST00000154229 (Inpp5b-005) 124741878-124751441 protein_coding
ENSMUST00000184454 (Inpp5b-002) 124741872-124801505 nonsense_mediated_decay
ENSMUSG00000028902 (Sf3a3)
splicing factor 3a, subunit 3 		ENSMUST00000030734 (Sf3a3-001) 124714776-124732460 protein_coding
ENSMUST00000151049 (Sf3a3-003) 124721733-124723382 processed_transcript
ENSMUST00000154712 (Sf3a3-002) 124714883-124718727 processed_transcript
ENSMUSG00000028907 (Utp11l)
UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) 		ENSMUST00000030738 (Utp11l-001) 124678160-124693600 protein_coding
ENSMUST00000153088 (Utp11l-002) 124678797-124693534 processed_transcript
ENSMUSG00000032643 (Fhl3)
four and a half LIM domains 3 		ENSMUST00000038684 (Fhl3-001) 124700720-124708611 protein_coding
ENSMUST00000106199 (Fhl3-002) 124700701-124708094 protein_coding
ENSMUST00000145942 (Fhl3-003) 124700719-124708077 nonsense_mediated_decay
ENSMUSG00000051219 (3100002H09Rik)
RIKEN cDNA 3100002H09 gene 		ENSMUST00000053604 (3100002H09Rik-201) 124609931-124610803 protein_coding
ENSMUSG00000073759 (4933407E24Rik)
RIKEN cDNA 4933407E24 gene 		ENSMUST00000133499 (4933407E24Rik-001) 124569190-124574645 lincRNA
ENSMUSG00000076271 (Mir697)
microRNA 697 		ENSMUST00000102316 (Mir697-201) 124731694-124731802 miRNA
ENSMUSG00000083104 (Gm12917)
predicted gene 12917 		ENSMUST00000119850 (Gm12917-001) 124718999-124719637 processed_pseudogene
ENSMUSG00000084526 (n-R5s192)
nuclear encoded rRNA 5S 192 		ENSMUST00000122577 (n-R5s192-201) 124820821-124820939 rRNA
ENSMUSG00000086087 (Gm12916)
predicted gene 12916 		ENSMUST00000139012 (Gm12916-001) 124293693-124299848 lincRNA
ENSMUSG00000086589 (Gm12915)
predicted gene 12915 		ENSMUST00000131381 (Gm12915-001) 124735730-124751354 processed_transcript
ENSMUSG00000086955 (1700021L23Rik)
RIKEN cDNA 1700021L23 gene 		ENSMUST00000153719 (1700021L23Rik-001) 124302837-124311461 lincRNA
ENSMUSG00000086978 (4933435F18Rik)
RIKEN cDNA 4933435F18 gene 		ENSMUST00000125578 (4933435F18Rik-002) 124331406-124332467 lincRNA
ENSMUST00000154878 (4933435F18Rik-001) 124326308-124332508 lincRNA
ENSMUSG00000090125 (Pou3f1)
POU domain, class 3, transcription factor 1 		ENSMUST00000053491 (Pou3f1-001) 124656807-124660655 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000892_0001ENSG00000183386ENST00000373016ENST00000475084ENST00000477194ENST00000483132ENST00000485803ENSG00000183431ENST00000373019ENST00000460925ENST00000461869ENST00000462258ENST00000470585ENST00000487062ENST00000488934ENST00000489537ENSG00000183520ENST00000373014ENST00000483182ENST00000486563ENST00000488453ENSG00000185668ENST00000373012ENSG00000212541ENST00000391239ENSG00000223589ENST00000424719ENSG00000224592ENST00000428151ENST00000432922ENSG00000237290ENST00000431311ENSG00000238063ENST00000452971ENSG00000277168ENST00000616313CIL_000892_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000892_0001ENSG00000183386ENST00000373016ENST00000475084ENST00000477194ENST00000483132ENST00000485803ENSG00000183431ENST00000373019ENST00000460925ENST00000462258ENST00000489537ENSG00000183520ENST00000373014ENST00000483182ENST00000486563ENST00000488453ENSG00000185668ENST00000373012ENSG00000212541ENST00000391239ENSG00000223589ENST00000424719ENSG00000224592ENST00000428151ENST00000432922ENSG00000237290ENST00000431311ENSG00000238063ENST00000452971ENSG00000277168ENST00000616313CIL_000892_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183386 ENST00000373016 4.558±0.00 4.666±0.00 N/A N/A 12.241±0.00 7.224±0.00 1.711±1.40 2.876±2.72 0.803±0.00 2.758±2.49 235.934±184.41 6.173±6.51 7.436±3.00 N/A
ENST00000475084 N/A N/A N/A N/A N/A N/A N/A N/A 0.734±0.00 0.131±0.00 N/A 20.827±0.00 21.132±0.00 9.502±0.00
ENST00000477194 N/A N/A N/A 1.687±0.00 1.068±0.00 N/A N/A N/A 0.667±0.00 N/A 99.004±86.40 N/A N/A 4.201±0.00
ENST00000483132 N/A N/A N/A N/A 0.787±0.00 N/A 0.413±0.00 2.961±0.00 N/A 0.488±0.00 N/A 0.621±0.00 N/A N/A
ENST00000485803 5.034±0.00 19.408±0.00 N/A 2.340±1.83 42.202±0.00 14.416±0.00 2.277±0.00 N/A 0.897±0.00 9.037±0.00 444.899±0.00 11.280±11.73 2.771±0.00 9.953±6.47
ENSG00000183431 ENST00000373019 N/A 2.857±0.00 N/A 1.722±0.00 3.867±0.00 1.849±0.00 1.712±0.00 1.351±0.00 2.793±0.00 1.633±0.32 N/A 6.184±3.31 14.243±0.00 15.009±0.00
ENST00000460925 N/A N/A N/A N/A 5.961±0.00 N/A N/A N/A N/A N/A 3.523±0.00 N/A N/A N/A
ENST00000461869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462258 N/A N/A N/A 11.650±0.00 N/A N/A 7.193±0.00 N/A N/A N/A 6.676±0.00 15.520±0.00 31.219±0.00 N/A
ENST00000470585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489537 N/A N/A 3.164±0.00 3.938±0.00 5.786±0.00 2.861±0.00 N/A N/A N/A 4.744±0.00 3.563±0.00 N/A N/A N/A
ENSG00000183520 ENST00000373014 7.354±0.00 10.954±0.00 1.159±0.00 6.373±0.61 6.271±2.60 4.902±1.13 5.608±3.25 5.956±2.90 6.794±0.87 3.309±0.87 21.856±12.13 10.705±2.85 10.056±4.32 13.922±4.85
ENST00000483182 5.737±0.00 12.786±0.00 0.829±0.00 5.028±2.64 6.217±0.00 4.865±0.00 6.748±2.20 5.616±0.00 7.425±0.00 4.469±1.25 15.666±8.32 N/A 5.756±1.97 N/A
ENST00000486563 N/A N/A 1.247±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488453 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.077±0.00 N/A N/A N/A N/A
ENSG00000185668 ENST00000373012 0.133±0.00 0.158±0.00 N/A 1.729±1.63 0.028±0.00 0.043±0.00 0.048±0.00 0.109±0.09 0.079±0.00 0.038±0.03 0.120±0.00 0.222±0.10 0.149±0.09 1.569±0.56
ENSG00000212541 ENST00000391239 N/A 1.572±0.00 N/A 0.391±0.00 N/A N/A 0.901±0.00 N/A 0.519±0.00 N/A N/A 1.288±0.74 N/A 0.345±0.00
ENSG00000223589 ENST00000424719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSG00000224592 ENST00000428151 0.275±0.00 0.293±0.00 N/A 0.485±0.00 0.174±0.00 0.123±0.00 N/A 0.177±0.00 N/A N/A N/A N/A 0.030±0.00 0.168±0.05
ENST00000432922 N/A N/A N/A 0.411±0.00 0.067±0.00 N/A N/A N/A 0.293±0.00 0.054±0.00 N/A 0.094±0.00 0.111±0.02 0.116±0.00
ENSG00000237290 ENST00000431311 N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.08
ENSG00000238063 ENST00000452971 N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A 0.890±0.20
ENSG00000277168 ENST00000616313 0.185±0.00 1.190±0.00 N/A 1.189±0.00 1.625±0.00 1.479±0.00 0.772±0.00 0.659±0.00 0.571±0.00 0.208±0.00 0.089±0.00 0.541±0.00 N/A 0.829±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028890 ENSMUST00000030723 2.944±0.98 7.180±1.88 N/A N/A 5.834±1.69 5.727±1.15 2.853±0.00 3.424±1.06 3.413±0.63 4.797±0.64 N/A 7.896±1.74 N/A 21.293±0.56
ENSMUST00000106193 2.113±0.65 N/A 3.696±0.35 3.889±0.25 3.116±0.60 N/A 2.405±0.28 3.782±0.00 3.413±1.09 N/A 2.528±0.59 3.546±0.10 5.905±2.04 8.129±1.21
ENSMUST00000138807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 96.302±0.00
ENSMUST00000147452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028894 ENSMUST00000094782 7.794±0.68 3.378±0.60 6.925±1.25 8.448±2.62 9.000±3.66 4.355±0.85 2.904±0.36 15.641±1.17 11.506±6.77 15.824±4.82 1.841±0.55 6.693±2.46 5.299±3.17 6.168±0.75
ENSMUST00000135971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142446 8.050±0.80 8.110±1.75 N/A N/A 13.649±1.50 8.672±1.13 N/A 23.657±0.00 N/A 26.181±1.80 N/A 15.330±3.75 N/A N/A
ENSMUST00000142652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184454 N/A N/A 1.842±0.00 N/A N/A 0.870±0.00 0.929±0.00 N/A N/A N/A 0.994±0.22 N/A N/A N/A
ENSMUSG00000028902 ENSMUST00000030734 8.103±3.23 2.152±0.97 17.118±2.16 27.828±8.75 5.612±1.10 4.859±1.62 4.291±0.64 6.566±2.40 18.121±16.03 4.848±1.69 5.559±0.35 17.447±19.18 48.844±34.18 20.551±12.77
ENSMUST00000151049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028907 ENSMUST00000030738 2.829±0.64 2.251±0.83 7.433±1.37 4.870±2.65 1.776±0.43 3.506±0.87 1.647±0.24 4.152±0.71 5.538±1.91 3.617±0.59 6.041±1.67 5.324±4.24 12.869±4.08 3.218±0.30
ENSMUST00000153088 0.556±0.09 N/A 1.534±0.01 1.471±0.74 0.427±0.05 0.427±0.00 0.286±0.00 0.815±0.41 1.426±0.58 0.535±0.09 1.317±0.19 2.480±0.47 1.383±0.38 0.419±0.06
ENSMUSG00000032643 ENSMUST00000038684 2.510±0.72 1.158±0.27 1.309±0.19 0.677±0.50 6.589±5.78 1.924±0.73 2.303±1.69 1.741±0.58 1.137±0.86 2.687±1.96 78.524±17.49 2.774±1.06 6.061±4.65 0.191±0.10
ENSMUST00000106199 3.345±1.15 6.554±0.59 0.580±0.12 0.614±0.17 13.196±8.32 2.126±0.64 2.447±0.77 1.657±0.52 0.544±0.38 4.989±1.35 N/A 6.779±1.32 1.877±0.26 0.389±0.10
ENSMUST00000145942 1.879±1.00 4.910±1.09 N/A 0.366±0.13 10.241±4.99 1.673±0.52 1.007±0.00 1.239±0.23 N/A 4.420±2.00 N/A 5.067±2.79 6.360±4.73 0.150±0.07
ENSMUSG00000051219 ENSMUST00000053604 N/A N/A N/A 0.080±0.03 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A 0.007±0.00 0.032±0.00
ENSMUSG00000073759 ENSMUST00000133499 0.067±0.00 N/A 0.206±0.08 0.054±0.01 N/A 0.335±0.14 0.080±0.03 0.194±0.08 0.010±0.00 0.127±0.10 0.066±0.00 0.094±0.02 N/A 2.350±1.21
ENSMUSG00000076271 ENSMUST00000102316 N/A N/A 74.955±0.00 N/A N/A N/A 1455.260±0.00 3000.930±0.00 N/A N/A N/A 13.726±0.00 N/A N/A
ENSMUSG00000083104 ENSMUST00000119850 0.693±0.11 0.779±0.22 0.442±0.02 0.735±0.12 1.506±0.36 0.881±0.26 0.178±0.08 0.531±0.13 0.497±0.25 0.934±0.08 0.169±0.06 1.518±0.50 0.409±0.15 0.215±0.13
ENSMUSG00000084526 ENSMUST00000122577 N/A N/A N/A N/A N/A N/A N/A N/A 10.732±0.00 N/A N/A 4978.741±4302.59 N/A N/A
ENSMUSG00000086087 ENSMUST00000139012 0.056±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.02
ENSMUSG00000086589 ENSMUST00000131381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.616±0.89 N/A 17.491±9.54
ENSMUSG00000086955 ENSMUST00000153719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.479±0.00
ENSMUSG00000086978 ENSMUST00000125578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.268±0.42
ENSMUST00000154878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00
ENSMUSG00000090125 ENSMUST00000053491 0.055±0.01 0.077±0.03 0.103±0.00 8.018±2.51 0.230±0.12 0.106±0.06 0.046±0.02 0.023±0.02 0.009±0.01 0.076±0.02 0.165±0.06 0.142±0.07 0.763±0.76 0.064±0.03

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