C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: four and a half LIM domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032643 Fhl3 10090 + 4:124700701-124708611 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038684 Fhl3-001 124700720-124708611 protein_coding
  ENSMUST00000106199 Fhl3-002 124700701-124708094 protein_coding
  ENSMUST00000145942 Fhl3-003 124700719-124708077 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038684ENSMUST00000106199ENSMUST00000145942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038684 2.510±0.72 1.158±0.27 1.309±0.19 0.677±0.50 6.589±5.78 1.924±0.73 2.303±1.69 1.741±0.58 1.137±0.86 2.687±1.96 78.524±17.49 2.774±1.06 6.061±4.65 0.191±0.10
ENSMUST00000106199 3.345±1.15 6.554±0.59 0.580±0.12 0.614±0.17 13.196±8.32 2.126±0.64 2.447±0.77 1.657±0.52 0.544±0.38 4.989±1.35 N/A 6.779±1.32 1.877±0.26 0.389±0.10
ENSMUST00000145942 1.879±1.00 4.910±1.09 N/A 0.366±0.13 10.241±4.99 1.673±0.52 1.007±0.00 1.239±0.23 N/A 4.420±2.00 N/A 5.067±2.79 6.360±4.73 0.150±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008II CIL_0008II_0002 VISTA 4:124101702-124703017
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943
CIL_0001ZV CIL_0001ZV_0002 CGP 4:124678160-124708611

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005925 IEA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0030018 IDA Z disc
GO:0030036 IDA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034643 fhl3a four and a half LIM domains 3a protein_coding Danio_rerio
ENSDARG00000059158 fhl3b four and a half LIM domains 3b protein_coding Danio_rerio
ENSG00000183386 FHL3 four and a half LIM domains 3 protein_coding Homo_sapiens

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