C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3a, subunit 3, 60kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183431 SF3A3 9606 - 1:37956975-37990921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373019 SF3A3-001 37956975-37990921 protein_coding
  ENST00000460925 SF3A3-004 37969387-37979199 processed_transcript
  ENST00000461869 SF3A3-007 37978990-37990075 processed_transcript
  ENST00000462258 SF3A3-002 37984118-37989973 processed_transcript
  ENST00000470585 SF3A3-005 37979391-37989995 processed_transcript
  ENST00000487062 SF3A3-003 37958063-37960693 processed_transcript
  ENST00000488934 SF3A3-006 37979465-37980789 processed_transcript
  ENST00000489537 SF3A3-008 37978723-37989650 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373019ENST00000460925ENST00000462258ENST00000489537
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373019 2.857±0.00 N/A 1.722±0.00 3.867±0.00 1.849±0.00 1.712±0.00 1.351±0.00 2.793±0.00 1.633±0.32 N/A 6.184±3.31 14.243±0.00 15.009±0.00
ENST00000460925 N/A N/A N/A 5.961±0.00 N/A N/A N/A N/A N/A 3.523±0.00 N/A N/A N/A
ENST00000462258 N/A N/A 11.650±0.00 N/A N/A 7.193±0.00 N/A N/A N/A 6.676±0.00 15.520±0.00 31.219±0.00 N/A
ENST00000489537 N/A 3.164±0.00 3.938±0.00 5.786±0.00 2.861±0.00 N/A N/A N/A 4.744±0.00 3.563±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095Y CIL_00095Y_0001 VISTA 1:37729017-38330016
CIL_0007UI CIL_0007UI_0001 VISTA 1:37794522-38395934
CIL_0008NZ CIL_0008NZ_0001 VISTA 1:37861857-38463593
CIL_0008EP CIL_0008EP_0001 VISTA 1:37891108-38491954
CIL_000892 CIL_000892_0001 VISTA 1:37897137-38498368
CIL_0007QI CIL_0007QI_0001 VISTA 1:37946403-38547845

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006397 IMP mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056447 sf3a3 splicing factor 3a, subunit 3 protein_coding Danio_rerio
ENSMUSG00000028902 Sf3a3 splicing factor 3a, subunit 3 protein_coding Mus_musculus

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