C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3a, subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028902 Sf3a3 10090 + 4:124714776-124732460 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030734 Sf3a3-001 124714776-124732460 protein_coding
  ENSMUST00000151049 Sf3a3-003 124721733-124723382 processed_transcript
  ENSMUST00000154712 Sf3a3-002 124714883-124718727 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030734 8.103±3.23 2.152±0.97 17.118±2.16 27.828±8.75 5.612±1.10 4.859±1.62 4.291±0.64 6.566±2.40 18.121±16.03 4.848±1.69 5.559±0.35 17.447±19.18 48.844±34.18 20.551±12.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056447 sf3a3 splicing factor 3a, subunit 3 protein_coding Danio_rerio
ENSG00000183431 SF3A3 splicing factor 3a, subunit 3, 60kDa protein_coding Homo_sapiens

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