C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 3, 60kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373019 SF3A3-001 ENSG00000183431 9606 - 1:37956975-37990921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000373019
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000373019 2.857±0.00 1.722±0.00 3.867±0.00 1.849±0.00 1.712±0.00 1.351±0.00 2.793±0.00 1.633±0.32 6.184±3.31 14.243±0.00 15.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095Y CIL_00095Y_0001 VISTA 1:37729017-38330016
CIL_0007UI CIL_0007UI_0001 VISTA 1:37794522-38395934
CIL_0008NZ CIL_0008NZ_0001 VISTA 1:37861857-38463593
CIL_0008EP CIL_0008EP_0001 VISTA 1:37891108-38491954
CIL_000892 CIL_000892_0001 VISTA 1:37897137-38498368
CIL_0007QI CIL_0007QI_0001 VISTA 1:37946403-38547845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006397 IMP mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030734 Sf3a3-001 protein_coding Mus_musculus 0 2113
ENSMUST00000154712 Sf3a3-002 processed_transcript Mus_musculus 0 702

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