C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(rC) binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183570 PCBP3 9606 + 21:45643694-45942454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000400304 PCBP3-003 45896294-45941706 protein_coding
  ENST00000400305 PCBP3-009 45896270-45942454 protein_coding
  ENST00000400308 PCBP3-005 45849961-45942454 protein_coding
  ENST00000400309 PCBP3-004 45849961-45942454 protein_coding
  ENST00000400310 PCBP3-002 45848163-45942454 protein_coding
  ENST00000400314 PCBP3-001 45643694-45942454 protein_coding
  ENST00000423045 PCBP3-015 45750194-45752986 processed_transcript
  ENST00000449640 PCBP3-201 45849990-45941706 protein_coding
  ENST00000465077 PCBP3-006 45643694-45788739 processed_transcript
  ENST00000468429 PCBP3-010 45901015-45940199 processed_transcript
  ENST00000472191 PCBP3-007 45643710-45669032 processed_transcript
  ENST00000475402 PCBP3-011 45914038-45941883 processed_transcript
  ENST00000481302 PCBP3-012 45853971-45859777 processed_transcript
  ENST00000498121 PCBP3-008 45858937-45901590 retained_intron
  ENST00000549265 PCBP3-013 45893877-45896309 protein_coding
  ENST00000593338 PCBP3-016 45735392-45749899 processed_transcript
  ENST00000594149 PCBP3-014 45673555-45751056 processed_transcript
  ENST00000594320 PCBP3-017 45749393-45750475 processed_transcript
  ENST00000609985 PCBP3-018 45748023-45749956 processed_transcript
  ENST00000610200 PCBP3-019 45749684-45751478 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000400304ENST00000400305ENST00000400308ENST00000400309ENST00000400314ENST00000423045ENST00000449640ENST00000465077ENST00000475402ENST00000498121ENST00000593338
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000400304 N/A N/A N/A N/A N/A 1.053±0.00 N/A N/A N/A 0.509±0.00 N/A N/A N/A
ENST00000400305 0.753±0.00 2.676±0.00 N/A 1.845±0.00 1.919±0.00 1.733±0.00 N/A 1.004±0.55 N/A N/A 0.080±0.00 0.689±0.30 5.295±0.00
ENST00000400308 N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A 4.205±0.00
ENST00000400309 0.566±0.00 1.118±0.00 N/A 1.050±0.08 1.754±1.42 1.314±0.00 N/A 1.168±0.00 0.305±0.00 1.275±0.00 1.011±0.64 0.774±0.00 5.430±0.00
ENST00000400314 1.083±0.00 N/A N/A 1.408±0.00 1.544±0.00 N/A 0.234±0.00 N/A N/A N/A 0.728±0.26 0.724±0.00 3.872±0.68
ENST00000423045 N/A N/A N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A 0.254±0.00 N/A N/A
ENST00000449640 N/A N/A N/A 1.055±0.00 0.149±0.00 N/A N/A N/A N/A N/A N/A 0.313±0.00 N/A
ENST00000465077 N/A N/A N/A N/A N/A 0.409±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000475402 N/A N/A 0.360±0.00 N/A N/A N/A N/A 1.784±0.00 N/A N/A N/A N/A N/A
ENST00000498121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000593338 N/A N/A 0.071±0.00 0.851±0.00 0.303±0.00 N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0016071 NAS mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054378 pcbp3 poly(rC) binding protein 3 protein_coding Danio_rerio
ENSDARG00000086030 poly(rC) binding protein 3 protein_coding Danio_rerio
ENSMUSG00000001120 Pcbp3 poly(rC) binding protein 3 protein_coding Mus_musculus

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