C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000400309 PCBP3-004 ENSG00000183570 9606 + 21:45849961-45942454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000400309
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000400309 0.566±0.00 1.118±0.00 1.050±0.08 1.754±1.42 1.314±0.00 1.168±0.00 0.305±0.00 1.275±0.00 1.011±0.64 0.774±0.00 5.430±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 NAS:IEA RNA binding
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0016071 NAS mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105411 Pcbp3-001 protein_coding Mus_musculus 0 1663
ENSMUST00000001148 Pcbp3-002 protein_coding Mus_musculus 0 1650
ENSMUST00000168465 Pcbp3-201 protein_coding Mus_musculus 0 1626
ENSMUST00000092393 Pcbp3-007 nonsense_mediated_decay Mus_musculus 0 983
ENSMUST00000168505 Pcbp3-003 processed_transcript Mus_musculus 0 924
ENSDART00000048893 pcbp3-201 protein_coding Danio_rerio 0 787
ENSDART00000134431 pcbp3-003 protein_coding Danio_rerio 0 645
ENSDART00000148317 pcbp3-004 protein_coding Danio_rerio 0 645
ENSDART00000015267 pcbp3-001 protein_coding Danio_rerio 0 645
ENSMUST00000168240 Pcbp3-005 processed_transcript Mus_musculus 0 584
ENSMUST00000171437 Pcbp3-004 processed_transcript Mus_musculus 0 553
ENSDART00000144448 pcbp3-005 nonsense_mediated_decay Danio_rerio 0 401
ENSMUST00000173854 Pcbp3-008 protein_coding Mus_musculus 0 398
ENSMUST00000165571 Pcbp3-006 processed_transcript Mus_musculus 0 359

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