C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(rC) binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001120 Pcbp3 10090 - 10:76761857-76961887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001148 Pcbp3-002 76761857-76961788 protein_coding
  ENSMUST00000092393 Pcbp3-007 76763305-76816706 nonsense_mediated_decay
  ENSMUST00000105411 Pcbp3-001 76761860-76961887 protein_coding
  ENSMUST00000165571 Pcbp3-006 76797848-76819407 processed_transcript
  ENSMUST00000168240 Pcbp3-005 76762232-76797864 processed_transcript
  ENSMUST00000168465 Pcbp3-201 76761858-76825869 protein_coding
  ENSMUST00000168505 Pcbp3-003 76761858-76822797 processed_transcript
  ENSMUST00000171437 Pcbp3-004 76789803-76905862 processed_transcript
  ENSMUST00000173854 Pcbp3-008 76762370-76788422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001148ENSMUST00000092393ENSMUST00000105411ENSMUST00000165571ENSMUST00000168240ENSMUST00000168465ENSMUST00000171437ENSMUST00000173854
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001148 2.819±0.03 N/A 5.302±1.11 7.287±0.45 1.037±0.00 N/A N/A 2.817±0.92 0.399±0.23 4.912±0.00 0.488±0.22 1.455±0.45 2.281±1.87 36.598±13.53
ENSMUST00000092393 N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.01 N/A 0.356±0.00 N/A N/A N/A
ENSMUST00000105411 N/A 2.706±0.92 2.416±0.17 2.692±0.29 0.567±0.03 0.694±0.14 0.256±0.05 1.630±0.00 0.078±0.06 1.840±0.22 0.120±0.01 1.210±0.76 0.622±0.23 17.664±1.40
ENSMUST00000165571 N/A N/A N/A 92.810±0.00 N/A N/A N/A N/A N/A N/A N/A 15.936±0.00 26.681±20.34 909.494±0.00
ENSMUST00000168240 N/A 1.747±0.00 N/A N/A N/A 1.009±0.18 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168465 1.432±0.00 3.767±2.40 4.896±1.36 5.197±0.00 1.135±0.46 1.130±0.66 0.445±0.13 2.969±0.59 0.336±0.26 3.923±1.02 0.450±0.20 2.472±1.47 2.370±2.27 N/A
ENSMUST00000171437 N/A N/A N/A 12.314±0.00 N/A N/A N/A N/A 0.168±0.09 N/A 0.587±0.00 2.377±0.95 N/A N/A
ENSMUST00000173854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.12 N/A 5.471±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005829 IEA cytosol
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054378 pcbp3 poly(rC) binding protein 3 protein_coding Danio_rerio
ENSDARG00000086030 poly(rC) binding protein 3 protein_coding Danio_rerio
ENSG00000183570 PCBP3 poly(rC) binding protein 3 protein_coding Homo_sapiens

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