C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Aly/REF export factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183684 ALYREF 9606 - 17:81887844-81891586 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000504015 ALYREF-004 81888341-81888987 processed_transcript
  ENST00000505490 ALYREF-001 81887844-81891586 protein_coding
  ENST00000511412 ALYREF-002 81889301-81891005 retained_intron
  ENST00000512673 ALYREF-003 81888901-81891394 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000505490ENST00000512673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000505490 27.831±0.00 44.492±0.00 5.447±0.00 14.452±2.47 16.044±7.52 16.896±5.16 10.822±5.37 14.447±5.19 4.688±0.00 19.668±12.86 18.097±10.71 83.778±58.32 80.720±44.63 124.821±48.17
ENST00000512673 N/A N/A 15.264±0.00 30.086±0.00 15.401±0.00 36.270±0.00 N/A N/A 11.226±0.00 15.773±0.00 26.134±0.00 172.604±136.61 307.205±0.00 400.387±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004M2 CIL_0004M2_0001 CGP 17:81867721-81891586
CIL_0004M3 CIL_0004M3_0001 CGP 17:81887844-81900991

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000018 IMP regulation of DNA recombination
GO:0000166 IEA nucleotide binding
GO:0000346 IDA transcription export complex
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003697 IEA single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 IMP mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing
GO:0031297 IMP replication fork processing
GO:0032786 IMP positive regulation of DNA-templated transcription, elongation
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0046784 IDA viral mRNA export from host cell nucleus
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077732 alyref Aly/REF export factor protein_coding Danio_rerio
ENSMUSG00000025134 Alyref Aly/REF export factor protein_coding Mus_musculus

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