C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Aly/REF export factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025134 Alyref 10090 - 11:120592121-120598365 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026125 Alyref-001 120592121-120598365 protein_coding
  ENSMUST00000155325 Alyref-002 120594509-120595657 processed_transcript
  ENSMUST00000156685 Alyref-003 120595616-120598231 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026125ENSMUST00000155325ENSMUST00000156685
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026125 10.641±6.84 3.881±2.10 6.597±0.00 6.518±3.64 3.151±0.53 10.714±4.30 1.884±0.37 4.190±2.05 5.519±4.52 3.733±0.85 1.784±0.35 17.588±9.81 6.627±5.03 4.048±1.75
ENSMUST00000155325 10.329±0.32 4.772±1.00 19.326±0.00 12.997±8.14 4.302±1.08 N/A 3.883±0.78 9.775±2.33 35.044±40.41 10.541±1.37 4.968±0.48 25.279±4.44 42.410±20.41 8.774±1.72
ENSMUST00000156685 4.755±0.00 9.051±1.97 9.306±0.00 26.110±0.00 7.522±1.78 N/A 2.352±0.35 3.691±0.97 3.549±2.15 6.727±2.14 N/A 76.090±0.00 44.804±52.72 7.957±5.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004M2 CIL_0004M2_0002 CGP 11:120578104-120598365
CIL_0004M3 CIL_0004M3_0002 CGP 11:120592121-120608198

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000018 IEA regulation of DNA recombination
GO:0000166 IEA nucleotide binding
GO:0000346 IEA transcription export complex
GO:0001649 IEA osteoblast differentiation
GO:0003697 IDA single-stranded DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IEA protein binding
GO:0005634 TAS nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006406 IEA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0031297 IEA replication fork processing
GO:0032786 IEA positive regulation of DNA-templated transcription, elongation
GO:0035145 IEA exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0046784 IEA viral mRNA export from host cell nucleus
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077732 alyref Aly/REF export factor protein_coding Danio_rerio
ENSG00000183684 ALYREF Aly/REF export factor protein_coding Homo_sapiens

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