C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 50A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183726 TMEM50A 9606 + 1:25337917-25362361 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374358 TMEM50A-001 25337917-25362361 protein_coding
  ENST00000468704 TMEM50A-005 25338460-25356853 processed_transcript
  ENST00000480937 TMEM50A-004 25338323-25361279 processed_transcript
  ENST00000487234 TMEM50A-006 25342592-25351654 processed_transcript
  ENST00000491936 TMEM50A-003 25338320-25361265 processed_transcript
  ENST00000498135 TMEM50A-002 25338317-25360967 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374358ENST00000468704ENST00000498135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374358 13.305±0.00 28.797±0.00 5.597±0.00 12.564±0.00 11.116±3.70 12.234±1.57 2.133±0.00 4.817±0.00 5.807±0.00 10.118±0.00 N/A 15.368±5.31 10.805±2.19 6.709±0.00
ENST00000468704 54.795±0.00 N/A N/A 29.618±0.00 53.947±0.00 55.100±0.00 N/A N/A 11.666±0.00 N/A 12.538±0.00 N/A N/A 40.920±0.00
ENST00000498135 75.674±0.00 70.510±0.00 N/A 26.635±0.00 41.077±12.34 72.746±0.00 15.363±9.07 49.868±0.00 18.617±3.29 59.249±0.00 22.068±0.00 53.892±30.40 50.551±10.64 41.474±9.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WX CIL_0001WX_0001 CGP 1:25272393-25362361
CIL_0003Q3 CIL_0003Q3_0002 CGP 1:25337917-25430192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015757 tmem50a transmembrane protein 50A protein_coding Danio_rerio
ENSMUSG00000028822 Tmem50a transmembrane protein 50A protein_coding Mus_musculus

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